Ichiro Yamato, Yoshimi Kakinuma, and Takeshi Murata. Operating principles of rotary molecular motors: differences between F1 and V1 motors. Biopys. Physico., 2016, 13, 37-44.
Rahman S, Yamato I, Saijo S, Mizutani K, Takamuku Y, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Murata T. Binding interactions of the peripheral stalk subunit isoforms from human V-ATPase. Biosci Biotechnol Biochem. 2016 Feb 10:1-13. [Epub ahead of print]
Arakawa T, Kobayashi-Yurugi T, Alguel Y, Iwanari H, Hatae H, Iwata M, Abe Y, Hino T, Ikeda-Suno C, Kuma H, Kang D, Murata T, Hamakubo T, Cameron AD, Kobayashi T, Hamasaki N, Iwata S. Crystal structure of the anion exchanger domain of human erythrocyte band 3. Science. 2015 Nov 6;350(6261):680-4. doi: 10.1126/science.aaa4335.
Nomura N, Verdon G, Kang HJ, Shimamura T, Nomura Y, Sonoda Y, Hussien SA, Qureshi AA, Coincon M, Sato Y, Abe H, Nakada-Nakura Y, Hino T, Arakawa T, Kusano-Arai O, Iwanari H, Murata T, Kobayashi T, Hamakubo T, Kasahara M, Iwata S, Drew D. Structure and mechanism of the mammalian fructose transporter GLUT5. Nature. 2015 Oct 15;526(7573):397-401. doi: 10.1038/nature14909. Epub 2015 Sep 30
Tanabe H, Fujii Y, Okada-Iwabu M, Iwabu M, Nakamura Y, Hosaka T, Motoyama K, Ikeda M, Wakiyama M, Terada T, Ohsawa N, Hato M, Ogasawara S, Hino T, Murata T, Iwata S, Hirata K, Kawano Y, Yamamoto M, Kimura-Someya T, Shirouzu M, Yamauchi T, Kadowaki T, Yokoyama S..:Crystal structures of the human adiponectin receptors. Nature. 2015 Apr 16;520(7547):312-6. doi: 10.1038/nature14301. Epub 2015 Apr 8.
Iino R, Ueno H, Minagawa Y, Suzuki K, Murata T. Rotational mechanism of Enterococcus hirae V1-ATPase by crystal-structure and single-molecule analyses. Curr Opin Struct Biol. 2015 Mar 18;31:49-56. doi: 10.1016/j.sbi.2015.02.013. [Epub ahead of print]
Tanabe H, Motoyama K, Ikeda M, Wakiyama M, Terada T, Ohsawa N, Hosaka T, Hato M, Fujii Y, Nakamura Y, Ogasawara S, Hino T, Murata T, Iwata S, Okada-Iwabu M, Iwabu M, Hirata K, Kawano Y, Yamamoto M, Kimura-Someya T, Shirouzu M, Yamauchi T, Kadowaki T, Yokoyama S. Expression, purification, crystallization, and preliminary X-ray crystallographic studies of the human adiponectin receptors, AdipoR1 and AdipoR2. J Struct Funct Genomics. 2015 Mar;16(1):11-23. doi: 10.1007/s10969-014-9192-z. Epub 2015 Jan 10.
Suharni, Nomura Y, Arakawa T, Hino T, Abe H, Nakada-Nakura Y, Sato Y, Iwanari H, Shiroishi M, Asada H, Shimamura T, Murata T, Kobayashi T, Hamakubo T, Iwata S, Nomura N. Proteoliposome-based selection of a recombinant antibody fragment against the human M2 muscarinic acetylcholine receptor. Monoclon Antib Immunodiagn Immunother. 2014 Dec;33(6):378-85. doi: 10.1089/mab.2014.0041.
Kano Suzuki and Takeshi Murata. Rotation mechanism of V1-ATPase. SPring-8 Research Frontiers 2013, 2014.
Iino R, Minagawa Y, Ueno H, Hara M, Murata T. Molecular Structure and Rotary Dynamics of Enterococcus hirae V1-ATPase. IUBMB Life. 2014 Sep;66(9):624-30. doi: 10.1002/iub.1311. Epub 2014 Sep 17.
Kandori H, Furutani Y, Murata T. Infrared spectroscopic studies on the V-ATPase. Biochim Biophys Acta. 2015 Jan;1847(1):134-41. doi: 10.1016/j.bbabio.2014.07.020. Epub 2014 Aug 8.
Ueno H, Minagawa Y, Hara M, Rahman S, Yamato I, Muneyuki E, Noji H, Murata T, Iino R. Torque generation of Enterococcus hirae V-ATPase. J Biol Chem. 2014 Nov 7;289(45):31212-23. doi: 10.1074/jbc.M114.598177. Epub 2014 Sep 25.
Terada T, Murata T, Shirouzu M, Yokoyama S. Cell-free expression of protein complexes for structural biology. Methods Mol Biol. 2014;1091:151-9. doi: 10.1007/978-1-62703-691-7_10.
Alam J, Yamato I, Arai S, Saijo S, Mizutani K, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Iwata S, Kakinuma Y, Murata T. Mutant LV476-7AA of A-subunit of Enterococcus hirae V1-ATPase: High affinity of A3B3 complex to DF axis and low ATPase activity. Springerplus. 2013 Dec 27;2:689. doi: 10.1186/2193-1801-2-689. eCollection 2013.
Minagawa Y, Ueno H, Hara M, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Yamato I, Muneyuki E, Noji H, Murata T, Iino R. Basic properties of rotary dynamics of the molecular motor Enterococcus hirae V1-ATPase. J Biol Chem. 2013 Nov 8;288(45):32700-7. doi: 10.1074/jbc.M113.506329. Epub 2013 Oct 2.
Md. Jahangir Alam, Satoshi Arai, Shinya Saijo, Kano Suzuki, Kenji Mizutani, Yoshiko Ishizuka-Katsura, Noboru Ohsawa, Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, So Iwata, Yoshimi Kakinuma, Ichiro Yamato and *Takeshi Murata.:Loose Binding of the DF Axis with the A3B3 Complex Stimulates the Initial Activity of Enterococcus hirae V1-ATPase. PLoS ONE, 8, e74291 (2013.9)
Tomoya Hino, *So Iwata and *Takeshi Murata.:Generation of functional antibodies for mammalian membrane protein crystallography. Curr. Opin. Struc. Biol., 23, 563-568 (2013)
Suhaila Rahman, Ichiro Yamato, Shinya Saijo, Kenji Mizutani, Yoshiko Ishizuka-Katsura, Noboru Ohsawa, Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, So Iwata and Takeshi Murata (2013) Biochemical and biophysical properties of interactions between subunits of the peripheral stalk region of human V-ATPase; PLoS ONE, 8(2):e55704.
Satoshi Arai, Shinya Saijo, Kano Suzuki, Kenji Mizutani, Yoshimi Kakinuma, Yoshiko Ishizuka-Katsura, Noboru, Ohsawa, Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, So Iwata, Ichiro Yamato and Takeshi Murata (2013) Rotation mechanism of Enterococcus hirae V1-ATPase based on asymmetric crystal structures; Nature, 493, 703-707
Miyuki Kawano-Kawada, Tomoko Iwaki, Toshiaki Hosaka, Takeshi Murata, Ichiro Yamato, Michio Homma, and Yoshimi Kakinuma (2012) Mutagenesis of the residues forming an ion binding pocket of the NtpK subunit of Enterococcus hirae V-ATPase, J. Bacteriol., 194, 4546-4549
Shiroishi M, Tsujimoto H, Makyio H, Asada H, Yurugi-Kobayashi T, Shimamura T, Murata T, Nomura N, Haga T, Iwata S, Kobayashi T (2012) Platform for the rapid construction and evaluation of GPCRs for crystallography in Saccharomyces cerevisiae, Microb. Cell Fact., 11, 78
Zahed Muhammed, Satoshi Arai, Shinya Saijo, Ichiro Yamato, Takeshi Murata, Atsushi Suenaga (2012) Calculating the Na+ translocating V-ATPase catalytic site affinity for substrate binding by homology modeled NtpA monomer using molecular dynamics/free energy calculation, J. Mol. Graph. Model., 37, 59-66
Tomoya Hino, Takatoshi Arakawa, Hiroko Iwanari, Takami Yurugi-Kobayashi, Chiyo Ikeda-Suno, Yoshiko Nakada-Nakura, Osamu Kusano-Arai, Simone Weyand, Tatsuro Shimamura, Norimichi Nomura, Alexander D. Cameron, Takuya Kobayashi, Takao Hamakubo, So Iwata & Takeshi Murata (2012) G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody; Nature, 482, 237-240
Shinya Saijo, Satoshi Arai, KhandokerM.M. Hossain, Kano Suzuki, Ichiro Yamato, Yoshimi Kakinuma, Yoshiko Ishizuka-Katsura, Noboru, Ohsawa, Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, So Iwata, and Takeshi Murata (2011) Crystal structure of the central axis DF complex of V-ATPase; Proc. Natl. Acad. Sci. U. S. A., 108, 19955-19960
Min Zhou, Nina Morgner, Nelson P. Barrera, Argyris Politis, Shoshanna C Isaacson, Dijana Matak-Vinković, Takeshi Murata, Ricardo A. Bernal, Daniela Stock and Carol V. Robinson (2011) Mass Spectrometry of intact V-type ATPases reveals bound lipids and the effects of nucleotide binding; Science, 334, 380-385
Kenji Mizutani, Misaki Yamamoto, Kano Suzuki, Ichiro Yamato, Yoshimi Kakinuma, Mikako Shirouzu, John E Walker, Shigeyuki Yokoyama, So Iwata, and Takeshi Murata (2011) Structure of the rotor ring modified with N,N-dicyclohexylcarbodiimide of the Na+-transporting vacuolar ATPase; Proc. Natl. Acad. Sci. U. S. A., 108, 13474-13479
Suhaila Rahman, Satoshi Arai, Shinya Saijo, Ichiro Yamato, and Takeshi Murata (2011) Sarkosyl is a good regeneration reagent for studies on vacuolar-type ATPase subunit interactions in Biacore experiments; Anali.Biochem., 418, 301-303
Suhaila Rahman, Yoshiko Ishizuka-Katsura, Satoshi Arai, Shinya Saijo, Ichiro Yamato, Mitsutoshi Toyama, Noboru Ohsawa, Mio Inoue, Keiko Honda, Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama, So Iwata and Takeshi Murata (2011) Expression, purification and characterization of isoforms of peripheral stalk subunits of human V-ATPase; Prot.Exp.Puri., 78, 181-188
Yuji Furutani, Takeshi Murata, and Hideki Kandori (2011) Sodium or Lithium Ion-Binding-Induced Structural Changes in the K-Ring of V-ATPase from Enterococcus hirae Revealed by ATR-FTIR Spectroscopy; J.Am.Chem. Soc., 133, 2860-2863
Miyuki Kawano-Kawada, Hiroko Takahashi, Kazuei Igarashi, Takeshi Murata, Ichiro Yamato, Michio Homma, and Yoshimi Kakinuma (2011) Significance of the glutamate-139 residue of the V-type Na+-ATPase NtpK subunit in catalytic turnover linked with salt tolerance of Enterococcus hirae; J.Bacteriol. 193, 3657-3661
Hidetsugu Asada, Tomoko Uemura, Takami Yurugi-Kobayashi, Mitsunori Shiroishi, Tatsuro Shimamura, Hirokazu Tsujimoto, Keisuke Ito, Taishi Sugawara, Takanori Nakane, Norimichi Nomura, Takeshi Murata, Tatsuya Haga, So Iwata, and Takuya Kobayashi (2011) Evaluation of the Pichia pastoris expression system for the production of GPCRs for structural analysis; Microb.CellFact., 10, 24 (1-13)
Natsuko Tokuda, Kiyohiko Igarashi, Tatsuro Shimamura, Takami Yurugi-Kobayashi, Mitsunori Shiroishi, Keisuke Ito, Taishi Sugawara, Hidetsugu Asada, Takeshi Murata, Norimichi Nomura, So Iwata, and Takuya Kobayashi (2011) Cloning, expression and purification of the anion exchanger 1 homologue from the basidiomycete Phanerochaete chrysosporium; Prot.Exp.Puri., 79, 81-87
K. M. Mozaffor Hssain, Satoshi Arai, Shinya Saijo, Yoshimi Kakinuma, Takeshi Murata, and Ichiro Yamato (2011) Expression and purification of the central stalk subunits of Na+-translocating V-type ATPase from Enterococcus hirae; Afr. J.Biotechnol., 10, 2406-2413
Takeshi Murata, Ichiro Yamato, Yoshimi Kakinuma, Mikako Shirouzu, John E. Walker, Shigeyuki Yokoyama, and So Iwata (2008) Ion binding and selectivity of the rotor ring of the Na+-transporting V-ATPase; Proc. Natl. Acad. Sci.U.S.A., 105, 8607-8612
Misaki Yamamoto, Satoru Unzai, Shinya Saijo, Kazuki Ito, Kenji Mizutani, Chiyo Suno-Ikeda, Yukako Yabuki-Miyata, Takaho Terada, Mitsutoshi Toyama, Mikako Shirouzu, Takuya Kobayashi, Yoshimi Kakinuma, Ichiro Yamato, Shigeyuki Yokoyama, So Iwata, and Takeshi Murata (2008) Interaction and Stoichiometry of the Peripheral Stalk Subunits NtpE and NtpF and the N-terminal hydrophilic domain of NtpI, of Enterococcus hirae V-ATPase ; J. Biol.Chem. 283, 19422-19431
Atsushi Suenaga, Osamu Umezu, Tadashi Ando, Ichiro Yamato, Takeshi Murata, Makoto Taiji (2008) Estimation of ligand binding free energies of F-ATPase by using molecular dynamics/free energy calculation; J. Comput. Chem. Jpn. 7, 103-116
Keisuke Ito, Taishi Sugawara, Mitsunori Shiroishi, Natsuko Tokuda, Azusa Kurokawa, Takumi Misaka, Hisayoshi Makyio, Takami Yurugi-Kobayashi, Tatsuro Shimamura, Norimichi Nomura, Takeshi Murata, Keiko Abe, So Iwata and Takuya Kobayashi (2008) Advanced method for high-throughput expression of mutated eukaryotic membrane proteins in Saccharomyces cerevisiae ; ochem.Biophys.Resea.Commu. 371, 841-845
Toshiaki Hosaka, Kazuma Takase, Takeshi Murata, Yoshimi Kakinuma, and Ichiro Yamato (2006) Deletion analysis of the subunit genes of V-type Na+-ATPase from Enterococcus hirae ; J.Biochem. (Tokyo), 139, 1045-1052
Takeshi Murata, Ichiro Yamato, Yoshimi Kakinuma Andrew G. W. Leslie and John E. Walker (2005) Structure of the rotor of the V-type Na+-ATPase from Enterococcus hirae. ; Science 308, 654-659
Toshiaki Hosaka, Takeshi Murata, Yoshimi Kakinuma and Ichiro Yamato (2004) Identification of Nucleotide Binding Sites in V-type Na+-ATPase from Enterococcus hirae. ; Biosci.Biotechnol.Biochem. 68, 293-299
Takeshi Murata, Ignacio Arechaga, Ian M. Fearnley Yoshimi Kakinuma, Ichiro Yamato and John E. Walker (2003) The Membrane Domain of the Na+-motive V-ATPase from Enterococcus hirae contains a Heptameric Rotor. ; J. Biol. Chem. 278, 21162-21167
Takeshi Murata, Yasushi Yoshikawa, Toshiaki Hosaka, Kazuma Takase, Yoshimi Kakinuma Ichiro Yamato and Takeshi Kikuchi (2002) Nucleotide binding sites in V-type Na+-ATPase from Enterococcus hirae. ; J. Biochem. (Tokyo) 132, 789-794
Takeshi Murata, Yoshimi Kakinuma and Ichiro Yamato (2001) ATP-dependent Affinity change of Na+-binding sites of V-ATPase. ; J.Biol.Chem. 276, 48337-48340
Takeshi Murata, Miyuki Kawano, Kazuei Igarashi, Ichiro Yamato and Yoshimi Kakinuma (2001) Catalytic Properties of Na+-translocating V-ATPase in Enterococcus hirae. ; Biochim.Biophys.Acta 1501, 75-81
Takeshi Murata, Kazuei Igarashi, Yoshimi Kakinuma and Ichiro Yamato (2000) Na+ Binding of V-type Na+-ATPase in Enterococcus hirae. ; J.Biol.Chem. 275, 13415-13419
34 Takeshi Murata, Kazuma Takase, Ichiro Yamato, Kazuei Igarashi and Yoshimi Kakinuma (1999) Properties of the V0V1 Na+-ATPase from Enterococcus hirae and its V0 Moiety. ; J.Biochem. (Tokyo) 125, 414-421
Takeshi Murata, Kazuma Takase, Ichiro Yamato, Kazuei Igarashi and Yoshimi Kakinuma (1997) Purification and Reconstitution of Na+-translocating Vacuolar ATPase from Enterococcus hirae. ; J.Biol.Chem. 272, 24885-24890
Takeshi Murata, Kazuma Takase, Ichiro Yamato, Kazuei Igarashi and Yoshimi Kakinuma (1996) The ntpJ Gene in the Enterococcus hirae ntp Operon Encodes a Component of KtrII Potassium Transport System Functionally Independent of Vacuolar Na+-ATPase. ; J.Biol.Chem. 271, 10042-10047
Takeshi Murata, Ichiro Yamao, Kazuei Igarashi and Yoshimi Kakinuma (1996) Intracellular Na+ Regulates Transcription of the ntp Operon Encoding a Vacuolar-type Na+-translocating ATPase in Enterococcus hirae. ; J. Biol. Chem. 271, 23661-23666
Takeshi Murata, Ichiro Yamato, Yoshimi Kakinuma (2005) Structure and Mechanism of Vacuolar Na+-Translocating ATPase fromEnterococcus hirae ; J.Bioener.Biomemb., 37, 411-413
Yoshimi Kakinuma, Ichiro Yamato and Takeshi Murata (1999) Structure and function of vacuolar Na+-translocating ATPase in Enterococcus hirae. ; J.Bioener.Biomemb. 31, 7-14