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Ueda Team　　Result

(34) 2012 Hiraiwa, T., Baba, A., and Shibata, T. Theoretical model for cell migration with internal polarity, shape deformation, and gradient sensing. Physical Review Letters, under revision.
(33) 2012 Baba, A., Hiraiwa, T., and Shibata, T. Directional sensing of deformed cells under faint gradients. Physical Review Letters, under revision.
(32) 2012 Matsuoka, S., Shibata, T., and Ueda, M. Asymmetric PTEN distribution regulated by spatial heterogeneity in membrane-binding state transitions. PLoS Computational Biology, under revision.
(31) 2012 Shibata, T., Nishikawa, M., Matsuoka, S., and Ueda, M. (2012). Modeling the self-organized phosphatidylinositol lipids signaling system in chemotactic cells based on quantitative image analysis”. J. Cell Sci., in press.
(30) 2012 Namba, T., Nishikawa, M., and Shibata, T. (2012). The relation of signal transduction to the sensitivity and dynamic range of bacterial chemotaxis. Biophys. J., in press.
(29) 2012 Takahashi, M., Shibata, T., Yanagida, T., and Sako, Y. (2012). A protein switch with tunable steepness reconstructed in Escherichia coli cells with eukaryotic signaling proteins. Biochem. Biophys. Res. Commun., 421, 731-735.
(28) 2012 Tsujioka, M. Yumura, S., Inouye, K., Patel, H., Ueda, M., and Yonemura, S. (2012). Talin couples the actomyosin cortex to the plasma membrane during rear retraction and cytokinesis. Proc. Natl. Acad. Sci. USA., 109, 12992-12997.
(27) 2012 Ochiai, H., Sakamoto, N., Fujita, K., Nishikawa, M., Suzuki, K., Matsuura, S., Miyamoto, T., Sakuma, T., Shibata, T., and Yamamoto, T. (2012). Zinc-finger nuclease-mediated targeted insertion of reporter genes for quantitative imaging of gene expression in sea urchin embryos. Proc. Natl. Acad. Sci. USA., 109, 10915-10920.
(26) 2012 Nishimura, S. I., Ueda, M., and Sasai, M. (2012). Non-Brownian dynamics and strategy of amoeboid cell locomotion. Phys Rev E, 85, 041909.
(25) 2011 Kobayashi Y., Shibata T., Kuramoto Y., and Mikhailov, A.S., “Robust network clocks: Design of genetic oscillators as a complex combinatorial optimization problem”. Phys Rev E 83:060901，2011 (DOI: 10.1103/PhysRevE.83.060901)　
(24) 2011 Ooyama S. and Shibata T., “Hierarchical organization of noise generates spontaneous signal in Paramecium cell, J. Theor. Biol. 283, 1?9, 2011 (DOI: 10.1016/j.jtbi.2011.05.016)　
(23)2011Takagi, H., Morimatsu, M., and Sako, Y., “Static and dynamic disorder in in vitro reconstituted receptor/adaptor interaction,” Advances in Chemical Physics on Single Molecule Biophysics: Experiments and Theories, in press (2011).
(22)2011Takagi, H., and Nishikawa, M., “Mechanochemical coupling revealed by the fluctuation analysis of different bio-molecular motors,” Advances in Chemical Physics on Single Molecule Biophysics: Experiments and Theories, in press (2011).
(21)2010Shibata, T., “Noisy signal transduction in cellular systems,” In Cell Signaling Reactions: Single-Molecule Kinetic Analysis. (eds. Y. Sako and M. Ueda). Springer-Verlag. in press (2010).
(20)2010Miyanaga, Y., and Ueda, M., “Single-molecule kinetic analysis of stochastic signal transduction mediated by G-protein coupled chemoattractant receptors,” In Cell Signaling Reactions: Single-Molecule Kinetic Analysis. (eds. Y. Sako and M. Ueda). Springer-Verlag. in press (2010).
(19)2010Matsuoka, S., “Statistical analysis of lateral diffusion and reaction kinetics of single molecules on membranes of living cells,” In Cell Signaling Reactions: Single-Molecule Kinetic Analysis. (eds. Y. Sako and M. Ueda). Springer-Verlag. in press (2010).
(18)2010 Ochiai, H., Fujita, K., Suzuki, K., Nishikawa, M., Shibata, T., Sakamoto, N., and Yamamoto, T., “Targeted mutagenesis in the sea urchin embryo using zinc-finger nucleases,” Genes Cell, 15,875-885 (2010).
(17)2010Arai, Y., Shibata, T., Matsuoka, S., Sato, M. J., Yanagida, T., and Ueda, M., “Self-organization of the phosphatidylinositol lipids signaling for random cell migration ” Proc. Natl. Acad. Sci. USA.,107, 12399-12404 (2010).
(16)2010 Nishikawa, M., and Shibata, T., “Nonadaptive fluctuation in an adaptive sensory system:Bacterial chemoreceptor ” PLoS ONE, 5, e11224 (2010).
(15)2009Matsuoka, S., Shibata, T. and Ueda, M. (2009). Statistical analysis of lateral diffusion and multi-state kinetics in single-molecule imaging. Biophys. J. 97: 1115-1124.
(14) Jan.12-14 2009Invitation Lecture:Shibata, T. (2009), “Self-organisation in chemotactic signaling for spontaneous cell migration of Eucaryotic cells“, The 3rd International Workshop on Systems Radiation Biology,Rovaniemi, Finland
(13) 2009Sato, M. J., Kuwayama, H., van Egmond, W. N., Takayama, A. L. K., Takagi, H., van Haastert, P. J. M., Yanagida, T., and Ueda, M. (2009). "Switching direction in electric-signal induced cell migration by cGMP and phosphatidylinositol signaling." Proc. Natl. Acad. Sci. USA. 106:6667-6672.
(12) Dec.7-9 2008Invitation Lecture:Takagi, H., "From fluctuation to function - an approach to molecular & cellular dynamics -", The IPR seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories,Osaka University.
(11) Dec.4-6 2008Invitation Lecture:Shibata, T. (2008), “Self-organization in chemotactic signaling for spontaneous cell migration of Eukaryotic cells” Integrating Physics, Chemistry, Mathematics and Biology to understand living systems (IPCMB 2008) , Bose Institute, Kolkata, India.
(10) 2008Miyanaga, Y., Matsuoka, S. and Ueda, M. (2009). Single-molecule imaging techniques to visualize chemotactic signaling events on the membrane of living Dictyostelium cells. In Chemotaxis, (eds. D. Hereld and T. Jin). Methods in Molecular Biology, in press.
(9) 2008Ueda, M., Shibata, T. and Sako, Y. (2008). Signal transduciton across the plasma membrane. In Single Molecule Dynamics in Life Science, (eds. T. Yanagida and Y. Ishii). WILEY-VCH Verelag GmbH & Co. KGaA, Weinheim, pp. 99-116.
(8) 2008Shibata, T. and Ueda, M. (2008). Noise generation, amplification and propagation in chemotactic signaling systems of living cells. BioSystems, 93, 126-132.
(7) 2008Ishihara, S. and Shibata, T. (2008). Mutual interaction in network motifs robustly sharpens gene expression in developmental processes, Journal of Theoretical Biology, 252, 131-144.
(6) 2008Takagi, H., Sato, M. J., Yanagida, T. and Ueda, M. (2008). Functional analysis of spontaneous cell movement under different physiological conditions. PLoS ONE, 3, e2648.
(5) 2008Nishimura, S. I., Ueda, M. and Sasai, M. (2009). Cortical factor feedback model for cell locomotion and cytofission. PLoS Computational Biology,Mar;5(3):e1000310. Epub 2009 Mar 13. 2009
(4) 2008Yumura, S., Ueda, M., Sako, Y., Kitanishi-Yumura, T. and Yanagida, T. (2008). Multiple mechanisms for accumulation of myosin II filaments at the equator during cytokinesis. Traffic, 9, 2089-2099.
(3) 2008Nishikawa, M., Takagi, H., Shibata, T. Iwane, A. H. and Yanagida, T. (2008). Fluctuation analysis of mechanochemical coupling depending on the type of biomolecular motors. Physical Review Letter, 101, 128103.
(2) Feb.2-6 2008Satomi Matsuoka, Toshio Yanagida and Masahiro Ueda (2008) “Dynamic regulation of PI(3,4,5)P3 phosphatase activity of PTEN on membranes revealed by single-molecule imaging”, Biophysical Society 52nd Annual Meeting, Febrary 2-6, 2008, Long Beach, CA, USA.
(1) Feb.2-6 2008Satomi Matsuoka, Toshio Yanagida and Masahiro Ueda (2008) “Dynamic regulation of PI(3,4,5)P3 phosphatase activity of PTEN on membranes revealed by single-molecule imaging”, Biophysical Society 52nd Annual Meeting, Febrary 2-6, 2008, Long Beach, CA, USA.
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