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  1. Double PHD finger proteins DPF3a and 3b are required as transcriptional coactivators in the SWI/SNF complex-dependent activation of the NF-κB RelA/p50 heterodimer.
    Ishizaka A, Mizutani T, Kobayashi K, Tando T, Sakurai K, Fujiwara T, Iba H.
    Journal of Biological Chemistry in press
  2. Mechanistic features of RNA-directed molecular asymmetry of amino acids
    Koji Tamura
    Viva Origino, Vol. 39, 2011, 39-44
  3. Origin of the peptide-forming function in the ribosome
    Koji Tamura
    Viva Origino, Vol. 39, 2011, 31-37
  4. Locus- and domain-dependent control of DNA methylation at mouse B1 retrotransposons during male germ cell development.
    Ichiyanagi K, Li Y, Watanabe T, Ichiyanagi T, Fukuda K, Kitayama J, Yamamoto Y, Kuramochi-Miyagawa S, Nakano T, Yabuta Y, Seki Y, Saitou M, Sasaki H
    Genome Res. 21(12):2058-66.(2011)
  5. Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus.
    Watanabe T, Tomizawa S, Mitsuya K, Totoki Y, Yamamoto Y, Kuramochi-Miyagawa S, Iida N, Hoki Y, Murphy PJ, Toyoda A, Gotoh K, Hiura H, Arima T, Fujiyama A, Sado T, Shibata T, Nakano T, Lin H, Ichiyanagi K, Soloway PD, Sasaki H.
    Science, 332(6031):848-52 (2011)
  6. MITOPLD is a mitochondrial protein essential for nuage nuage formation and piRNA buigenesis in the mouse germline.
    Watanabe T, Chuma S, Yamamoto Y, Kuramochi-Miyagawa S, Totoki Y, Toyoda A, Hoki Y, Fujiyama A, Shibata T, Sado T, Noce T, Nakano T, Nakatsuji N, Lin H, Sasaki H.
    Dev Cell. 23(3):364-75 (2011)
  7. Gtsf1/Cue110, a gene encoding a protein with two copies of a CHHC Zn-finger motif, is involved in spermatogenesis and retrotransposon suppression in murine testes.
    Yoshimura T. Toyoda S. Kuramochi-Miyagawa S. Miyazaki T. Miyazaki S. Tashiro F. Yamato E. Nakano T. Miyazaki J.
    Developmental Biology. 335(1):216-727
  8. The N domain of Argonaute drives duplex unwinding during RISC assembly
    Pieter Bas Kwak, and Yukihide Tomar
    Nat Struct Mol Biol. 10 January 2012 | doi:10.1038/nsmb.2232 [Epub ahead of print]
  9. Function of homo- and hetero-oligomers of human nucleoplasmin/nucleophosmin family proteins NPM1, NPM2, and NPM3 during sperm chromatin remodeling
    Mitsuru Okuwaki, Ayako Sumi, Miharu Hisaoka, Ai Satome, Satoko Akashi, Yoshifumi Nishimura, Kyosuke Nagata
    Nucleic Acids Research, In press (2012)
  10. PRMT1 is required for RAP55 to localize to processing bodies
    Ken Matsumoto, , Hiroshi Nakayama, Mami Yoshimura, Akiko Masuda, Naoshi Dohmae, Shogo Matsumoto and Masafumi Tsujimoto
    RNA Biology in press
  11. Surmounting Chemoresistance by Targeting the Y-Box Binding Protein-1
    Ikuko Inoue, Ken Matsumoto, Yingnan Yu, Boon-Huat Bay
    The Anatomical Record: Advances in Integrative Anatomy and Evolutionary Biology Volume 295, Issue 2, pages 215?222, February 2012
  12. PRAS40 is a functionally critical target for EWS repression in Ewing's sarcoma
    Lin Huang, Yuji Nakai, Iku Kuwahara, and Ken Matsumoto
    Cancer Research Published OnlineFirst January 12, 2012; doi: 10.1158/0008-5472.CAN-11-2254
  13. Molecular basis for RNA polymerization by Qbeta replicase
    Daijiro Takeshita Kozo Tomita
    Nature Structural & Molecular Biology Year published:(2012) DOI:doi:10.1038/nsmb.2204
  14. Dicer is dispensable for asymmetric RISC loading in mammals.
    Juan Guillermo Betancur, Yukihide Tomari
    RNA 2012 Jan; 18(1):24-30. Epub 2011 Nov 21.
  15. Crystallization and preliminary X-ray diffraction analysis of an archaeal tRNA modification enzyme, TiaS, complexed with tRNAIle2 and ATP
    Takuo Osawa, Hideko Inanaga, Satoshi Kimura, Naohiro Terasaka Tsutomu Suzuki, Tomoyuki Numata
    Acta Crystallographica Section F 67, 1414-1416 (2011)
  16. Biogenesis of 2-agmatinylcytidine catalyzed by the dual protein and RNA kinase TiaS
    Naohiro Terasaka, Satoshi Kimura, Takuo Osawa, Tomoyuki Numata, Tsutomu Suzuki
    Nature Structural & Molecular Biology 18, 1268-1274 (2011) Published online 16 October 2011
  17. Structural basis of tRNA agmatinylation essential for AUA codon decoding
    Takuo Osawa, Satoshi Kimura, Naohiro Terasaka, Hideko Inanaga, Tsutomu Suzuki, Tomoyuki Numata
    Nature Structural & Molecular Biology 18, 1275-1280 (2011) Published online 16 October 2011
  18. Translational inhibition by deadenylation-independent mechanisms is central to microRNA-mediated silencing in zebrafish
    Mishima Y, Fukao A, Kishimioto T, Sakamoto H, Fujiwara, T., Inoue K.
    Proc. Natl. Acad. Sci. USA (2011)、in press
  19. Functional and direct interaction between the RNA binding protein HuD and active Akt1
    Fujiwara, T., Fukao, A.、Sasano Y, Matsuzaki H, Kikkawa U, Imataka H, Inoue K, Endo S, Sonenberg N, Thoma C, Sakamoto H
    Nucleic Acids Research (2011)、Nov 10. [Epub ahead of print]
  20. Mechanisms of translational regulation by a human eIF5-mimic protein.
    Singh CR, Watanabe R, Zhou D, Jennings MD, Fukao A, Lee B, Ikeda Y, Chiorini JA, Campbell SG, Ashe MP, Fujiwara, T., Wek RC, Pavitt GD, Asano K
    Nucleic Acids Research 39, 8314-8328 (2011)
  21. Microtubule association of a neuronal RNA-binding protein HuD through its binding to the light chain of MAP1B.
    Fujiwara, Y., Kasashima K, Saito K, Fukuda M, Fukao A, Sasano Y, Inoue K, Fujiwara, T.
    Biochimie 93. 817-822 (2011)
  22. Single-embryo metabolomics and systematic prediction of developmental stage in zebrafish.
    Hayashi, S., Yoshida, M., Fujiwara, T., Maegawa, S., Fukusaki, E.
    Z Naturforsch C. 66, 191-198 (2011)
  23. A small nucleolar RNA functions in rRNA processing in C. elegans
    Hokii, Y., Sasano Y, Sato M, Sakamoto H, Sakata K, Shingai R, Taneda A, Oka S, Himeno H, Muto A, Fujiwara, T.
    Nucleic Acids Research 38, 5909-5918 (2010)
  24. DAZL relieves miRNA-mediated repression of germline mRNAs by controlling poly(A) tail length in zebrafish.
    Takeda, Y., Mishima, Y., Fujiwara, T., Sakamoto, H., Inoue, K.
    PLoS ONE 4, e7513 (2009)
  25. Positive autoregulation of a KNOX gene is essential for shoot meristem maintenance in rice.
    Katsutoshi Tsuda, Yutaka Sato, Yukihiro Itoh, Nori Kurata
    The Plant Cell Published online before print December 2011, doi: http://dx.doi.org/10.1105/tpc.111.090050
  26. RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice.
    Daisuke Ogawa, Kiyomi Abe, Akio Miyao, Mikiko Kojima, Hitoshi Sakakibara, Megumi Mizutani, Haruka Morita, Yosuke Toda, Tokunori Hobo, Yutaka Sato, Tsukaho Hattori, Hirohiko Hirochika, Shin Takeda
    Nature Communications Vol 2, 278, 2011
  27. Non-retroviral fossils in vertebrate genomes.
    Masahiro Horie and Keizo Tomonaga
    Viruses 3:1836-1848 (2011)
  28. A novel Borna disease virus vector system that stably expresses foreign proteins from an intercistronic noncoding region
    Daito T, Fujino K, Honda T, Matsumoto Y, Watanabe Y and Tomonaga K.
    Journal of Virology 85: 12170-12178 (2011)
  29. No evidence for natural selection on endogenous Borna-like nucleoprotein elements after the divergence of Old World and New World monkeys.
    Kobayashi Y, Horie M, Tomonaga K and Suzuki Y.
    PLoS One 6:e24403 (2011)
  30. Analysis of intracellular distribution of Borna disease virus glycoprotein fused with fluorescent markers in living cells.
    Daito T, Fujino K, Watanabe Y, Ikuta K and Tomonaga K.
    Journal of Veterinary Medical Science 73: 1243-1247 (2011)
  31. Upregulation of insulin-like growth factor binding protein 3 in astrocytes of transgenic mice that express Borna disease virus phosphoprotein.
    Honda T, Fujino K, Okuzaki D, Ohtaki N, Matsumoto Y, Horie M, Daito T, Itoh M and Tomonaga K.
    Journal of Virology 85: 4567-4571 (2011)
  32. Living fossil or evolving virus?
    Keizo Tomonaga
    EMBO Reports 11:327 (2010)
  33. Fluorescence Detection of Single Nucleotide Polymorphisms Using Nucleic Acid Probe Containing Tricyclic Base-linked Acyclonucleoside
    Mayumi Hattori, Tokimitsu Ohki, Emiko Yanase, and Yoshihito Ueno
    Bioorg. Med. Chem. Lett., 22, 253–257 (2012).
  34. Nucleic acid probe containing fluorescent tricyclic base-linked acyclonucleoside for detection of single nucleotide polymorphisms
    Kinji Furukawa, Mayumi Hattori, Tokimitsu Ohki, Yoshiaki Kitamura, Yukio Kitade, and Yoshihito Ueno
    Bioorg. Med. Chem., 20, 16–24 (2012).
  35. Incorporation of biaryl units into the 5′ and 3′ ends of sense and antisense strands of siRNA duplexes improves strand selectivity and nuclease resistance
    Kayo Yoshikawa, Aya Ogata, Chiho Matsuda, Michinori Kohara, Hideo Iba, Yukio Kitade, and Yoshihito Ueno
    Bioconjugate Chem., 22, 42–49 (2011).
  36. Biaryl modification of the 5′-terminus of one strand of a microRNA duplex induces strand specificity
    Aya Ogata, Chihiro Furukawa, Kouhei Sakurai, Hideo Iba, Yukio Kitade, and Yoshihito Ueno
    Bioorg. Med. Chem. Lett., 20, 7299–7302 (2010).
  37. Role of Template Activating Factor-I as a chaperone in linker histone dynamics
    Kosuke Kato, Mitsuru Okuwaki, Kyosuke Nagata
    Journal of Cell Science 2011.Oct.1 (Vol.124, p.3254-65)
  38. RMRP is a non-coding RNA essential for early murine development
    Rosenbluh J, Nijhawan D, Chen Z, Wong KK, Masutomi K*, Hahn WC*(*: co-corresponding auther)
    PLoS ONE,2011; 6: e26270 (2011/10/19)
  39. 55 amino acid linker between helicase and carboxyl terminal domains of RIG-I functions as a critical repression domain and determines inter-domain conformation.
    Kageyama M, Takahasi K, Narita R, Hirai R, Yoneyama M, Kato H, Fujita T
    Biochem. Biophys. Res. Commun., 415: 75-81, 2011.
  40. Mutations in POLR3A and POLR3B Encoding RNA Polymerase III Subunits Cause an Autosomal-Recessive Hypomyelinating Leukoencephalopathy.
    Saitsu H, Osaka H, Sasaki M, Takanashi J, Hamada K, Yamashita A, Shibayama H, Shiina M, Kondo Y, Nishiyama K, Tsurusaki Y, Miyake N, Doi H, Ogata K, Inoue K, Matsumoto N.
    The American Journal of Human Genetics 2011/10/28(e-pub)
  41. Ribosome evolution: Emergence of peptide synthesis machinery
    Koji Tamura
    Journal of Biosciences, Vol. 36, 921-928, 2011
  42. A plastid protein NUS1 is essential for build-up of the genetic system for early chloroplast development under cold stress conditions
    Kensuke Kusumi, Chikako Sakata, Takahiro Nakamura, Shinji Kawasaki, Atsushi Yoshimura, Koh Iba
    The Plant Journal (in press; doi: 10.1111/j.1365-313X.2011.04755.x.)
  43. Identification and characterization of the RNA binding surface of the pentatricopeptide repeat protein
    Keiko Kobayashi, Masuyo Kawabata, Keizo Hisano, Tomohiko Kazama, Ken Matsuoka, Mamoru Sugita, Takahiro Nakamura
    Nucleic Acids Research (in press; doi:10.1093/nar/gkr1084)
  44. N- and C-terminal Upf1 phosphorylations create binding platform for SMG-6 and SMG-5:-7 during NMD.
    Yukiko Okada-Katsuhata, Y,Yamashita, A, Kutsuzawa K., Izumi N., Hirahara F., Ohno S.
    Nucl. Acids Res. (2011) doi: 10.1093/nar/gkr791
  45. Hsp90 is involved in the formation of P-bodies and stress granules
    Ken Matsumotoab, Michiko Minamic, Fumika Shinozakic, Yukari Suzukid, Keiko Abed, Shuhei Zennoe, Shogo Matsumotoa , Yasufumi Minami
    Biochemical and Biophysical Research Communications 2011 Apr 22;407(4):720-4.
  46. Hsp90 regulates PIKK family proteins together with the RUVBL1/2 and Tel2-containing co-factor complex
    Izumi N, Yamashita A, Hiano H, Ohno S.
    Cancer Science Article first published online: 24 OCT 2011 DOI: 10.1111/j.1349-7006.2011.02112.x
  47. Cyclophilin 40 Facilitates HSP90-mediated RISC Assembly in Plant.
    Taichiro Iki, Manabu Yoshikawa, Tetsuo Meshi, Masayuki Ishikawa
    EMBO Journal Journal advance online publication 1 November 2011; doi:10.1038/emboj.2011.395
  48. 3´end formation of PIWI-interacting RNAs in vitro
    Shinpei Kawaoka, Natsuko Izumi, Susumu Katsuma and YukihideTomari
    Molecular Cell. 2011 Sep16;43(6)1015-10222
  49. Recognition of the pre-miRNA structure by Drosophila Dicer-1
    Akihisa Tsutsumi, Tomoko Kawamata, Natsuko Izumi, Hervé Seitz, and Yukihide Tomari
    Nature Structural & Molecular Biology 2011 Sep 18 Epub ahead of print
  50. LAX PANICLE2 of Rice Encodes a Novel Nuclear Protein and Regulates the Formation of Axillary Meristems
    Hiroaki Tabuchi, Yu Zhang, Susumu Hattori, Minami Omae, Sae Shimizu-Sato, Tetsuo Oikawa, Qian Qian, Minoru Nishimura, Hidemi Kitano, He Xie, Xiaohua Fang, Hitoshi Yoshida, Junko Kyozuka, Fan Chen, and Yutaka Sato
    Plant Cell 2011 tpc.111.088765; First Published on September 30, 2011; doi:10.1105/tpc.111.088765
  51. A novel role for hSMG-1 in stress granule formation.
    Brown JA. , Robert TL, Richards R , Woods R, Limα GB, Ohno S, Yamashita A, Abraham RT, Guevenα N, Lavin MF
    Mol. Cell. Biol. doi:10.1128/MCB.05987-11
  52. The intron of tRNA-TrpCCA is dispensable for growth and translation of Saccharomyces cerevisiae.
    Shunsuke Mori, Takuya Kajita, Toshiya Endo, and Tohru Yoshihisa
    RNA , doi: 10.1261/rna.2851411
  53. Tumor-associated macrophages regulate  tumorigenicity and anti-cancer drug responses of cancer stem/initiating cells
    Jinushi M, Chiba S, Yoshiyama H, Masutomi K, Kinoshita I, Dosaka-Akita H, Yagita H, Takaoka A, Tahara H
    Proc Natl Acad Sci U S A 2011; 108: 12425-12430
  54. eXIST with matrix-associated proteins
    Shinichi Nakagawa and Kannanganattu V. Prasanth
    Trends in Cell Biology June 2011, Vol. 21, No. 6, 321-327
  55. RNA-directed molecular asymmetry of amino acids
    Koji Tamura
    Viva Origino, Vol. 38, 2010, 18-22
  56. Molecular Basis for Chiral Selection in RNA Aminoacylation
    Koji Tamura
    International Journal of Molecular Sciences, Vol. 12, 4745-4757, 2011
  57. RIG-I-inducible miR-23b inhibits infections by minor group rhinoviruses through down-regulation of the receptor VLDLR.
    Ouda R, Onomoto K, Takahasi K, Edwards MR, Kato H, Yoneyama M, Fujita T
    J Biol Chem., 286, 26210-26219, 2011
  58. Comparison of telomere length and association with progenitor cell markers inlacrimal gland between Sjögren and non-Sjögren syndrome dry eye patients
    Kawashima M, Kawakita T, Maida Y, Kamoi M, Ogawa Y, Shimmura S, Masutomi K, Tsubota K
    Molecular Vision 2011;17:1397-1404, 2011/5/27
  59. Native Gel Analysis for RISC Assembly..
    Kawamata T, Tomari Y
    Methods Mol Biol. 2011;725:91-105.
  60. .Zygotic amplification of secondary piRNAs during silkworm embryogenesis.
    Kawaoka S, Arai Y, Kadota K, Suzuki Y, Hara K, Sugano S, Shimizu K, Tomari Y, Shimada T, Katsuma S
    RNA. 2011 Jul ;17(7): 1401-07
  61. .Multilayer checkpoints for microRNA authenticity during RISC assembly.
    Kawamata T, Yoda M, Tomari Y
    EMBO Rep. 2011 in press
  62. Maintenance of tumor initiating cells of defined genetic composition by a complex composed of nucleostemin, hTERT and BRG1
    Okamoto N, Yasukawa M, Nguyen C, Maida Y, Possemato R, Shibata T, Fukami K, Hahn WC, Masutomi K
    Proc Natl Acad Sci doi/10.1073/pnas.1015171108
  63. Competition between a noncoding exon and introns:Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1
    Hitomi Tsuiji,Rei Yoshimoto,Yuko Hasegawa,Masaaki Furuno,Minoru Yoshida and Shinichi Nakagawa
    Genes Cells. 2011 May; 16(5): 479–490.
  64. The microRNA pathway and cancer.
    Kwak PB, Iwasaki S (equal contribution), *Tomari Y
    Cancer Sci. 2010 Nov;101(11):2309-15.
  65. Retinoic Acid-inducible gene-I-like receptors.
    Onoguchi K, Yoneyama M, Fujita T
    J Interferon Cytokine Res., 31, 27-31, 2011
  66. Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice
    Shinichi Nakagawa, Takao Naganuma, Go Shioi, and Tetsuro Hirose
    J. Cell Biol. Vol. 193 No. 1 31–39
  67. Peptide Bond Formation: RNA's Big Bang
    Koji Tamura
    Journal of Cosmology, Vol. 13, 3800-3810, 2011
  68. Bacterial populations assimilating carbon from 13C-labeled plant residue in soil: Analysis by a DNA-SIP approach.
    Chol Gyu Lee, Takeshi Watanabe, Yutaka Sato, Jun Murase, Susumu Asakawa, Makoto Kimura
    Siol Biol. Biochem. 43, 814-822, 2011.
  69. Hepatocellular carcinoma arising from ectopic liver tissue in the spleen producing insulin-like growth factor II.
    M. Matsuyama, Sugiura S., Kakita A., Sato Y., Hayakawa N., Suzuki A., Yamada M., Miura K., Kameya T., Kuroda M
    Pathology-Research and Practice, 2011 207, 124-126.
  70. Gateway binary vectors with the bialaphos resistance gene, bar, as a selection marker for plant transformation.
    Shinya Nakamura, Shoji Mano, Yuji Tanaka, Masato Ohnishi, Chihiro Nakamori, Masami Araki, Tomoko Niwa, Mikio Nishimura, Hironori Kaminaka, Tsuyoshi Nakagawa, Yutaka Sato, Sumie Ishiguro
    Biosci. Biotechnol. Biochem., 74, 1315-1319, 2010.
  71. WAVY LEAF 1, an Ortholog of Arabidopsis HEN1, Regulates Shoot Development by Maintaining microRNA and trans-acting siRNA Accumulation in Rice.
    Masashi Abe, Takanori Yoshikawa, Misuzu Nosaka, Hitoshi Sakakibara, Yutaka Sato, Yasuo Nagato, Jun-ichi Itoh
    Plant Physiol., 2010 154, 1335-1346.
  72. Y-box binding protein 1 is up-regulated in proliferative breast cancer and its inhibition deregulates the cell cycle.
    Yu, Y.-N., Yip, G. W.-C., Tan, P.-H., Thike, A. A., Matsumoto, K., Tsujimoto, M., and Bay, B.-H
    Int. J. Oncol. 2010 Aug; 37(2):483-92.
  73. MicroRNA Regulation of Glycoprotein B5R in Oncolytic Vaccinia Virus Reduces Viral Pathogenicity Without Impairing Its Antitumor Efficacy.
    Hikichi M, Kidokoro M, Haraguchi T, Iba H, Shida H, Tahara H, Nakamura T.
    Molecular Therapy, online March 8, 2011
  74. Nonsense-Mediated mRNA Decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8.
    Arias-Palomo E, Yamashita A (co-first author), Fernández IS, Núñez-Ramírez R, Bamba Y, Izumi N, Ohno S, Llorca S
    Genes and Development. 25(2):153-164. 2011.
  75. Post-transcriptional Defects of Antioxidant Selenoenzymes Cause Oxidative Stress under Methylmercury Exposure.
    Usuki F, Yamashita A, Fujimura M
    J. Biol. Chem. 2011 286: 6641-6649.
  76. Characterization of SMG-9, an essential component of the nonsense-mediated mRNA decay SMG1C complex.
    Fernández1 SI, Yamashita A (co-first author), Arias-Palomo E, Bamba Y, Bartolomé RA, Canales MA, Teixidó J, Ohno S, Llorca O
    Nucleic Acids Research. 39(1):347-358. 2011. (Epub 2010 Sep 3)
  77. ASPP2 regulates epithelial cell polarity through the PAR complex.
    Cong W, Hirose T, Harita Y, Yamashita A, Mizuno K, Hirano H, Ohno S
    Curr Biol.;20(15):1408-1414. 2010
  78. Sde2: a novel nuclear protein essential for telomeric silencing and genomic stability in Schizosaccharomyces pombe
    Rie Sugioka-Sugiyamaa, and Tomoyasu Sugiyama
    BBRC doi:10.1016/j.bbrc.2011.02.068 Feb. 17, 2011 online
  79. Two-step cleavage of hairpin RNA with 5' overhangs by human DICER
    Ando Y, Maida Y, Morinaga A, Burroughs AM, Kimura R, Chiba J, Suzuki H, Masutomi K, Hayashizaki, Y
    BMC Molecular Biology, online 2011.2.9
  80. RNA-dependent RNA polymerase in RNA silencing
    Maida Y, Masutomi K
    Biological Chemistry online 2011.2.7
  81. LGP2 is a positive regulator of RIG-I- and MDA5-mediated antiviral responses.
    Satoh T, Kato H, Kumagai Y, Yoneyama M, Sato S, Matsushita K, Tsujimura T, Fujita T, Akira S, Takeuchi O
    Proc. Natl. Acad. Sci. USA,, 107, 1512-7, 2010
  82. Site-specific incorporation of 4-iodo-l-phenylalanine through opal suppression.
    Kodama K, Nakayama H, Sakamoto K, Fukuzawa S, Kigawa T, Yabuki T, Kitabatake M, Takio K, Yokoyama S.
    J Biochem. (2010) 148(2):179-187
  83. Insights into tRNA-dependent amidotransferase evolution and catalysis from the structure of the Aquifex aeolicus enzyme
    Wu J, Bu W, Sheppard K, Kitabatake M, Kwon ST, Soll D, Smith JL
    J Mol Biol (2009) 391(4):703-716
  84. Roles of TOM70 in import of presequence-containing mitochondrial proteins.
    Yamamoto, H., Fukui, K., Takahashi, H., Kitamura, S., Shiota, H., Terao, K., Uchida, M., Esaki, M., Nishikawa, S., Yoshihisa, T., Yamano, Y., and Endo, T.
    J. Biol. Chem., 284, 31635-31646 (2009)
  85. Mechanism for the Alteration of the Substrate Specificities of Template-Independent RNA Polymerases
    Yukimatsu Toh, Daijiro Takeshita, Takashi Nagaike, Tomoyuki Numata and Kozo Tomita
    Structure, 2011 ; 19 (2), 232-243.
  86. Red1 promotes the elimination of meiosis-specific mRNAs in vegetatively growing fission yeast
    Tomoyasu Sugiyama and Rie Sugioka-Sugiyama
    The EMBO Journal advance online publication 11 February 2011; doi:10.1038/emboj.2011.32
  87. Trans-acting RNAs as molecular probes for monitoring time-dependent structural change of an RNA complex adapting two structures.
    Maeda Y, Furuta H, Ikawa Y
    J Biosci Bioeng. 2010 Dec 14. [Epub ahead of print]
  88. Development of Defective and Persistent Sendai Virus Vector: a Unique Gene Delivery/Expression System Ideal for Cell Reprogramming.
    Ken Nishimura, Masayuki Sano, Manami Ohtaka, Birei Furuta, Yoko Umemura, Yoshiro Nakajima, Yuzuru Ikehara, Toshihiro Kobayashi, Hiroaki Segawa, Satoko Takayasu, Hideyuki Sato, Kaori Motomura, Eriko Uchida, Toshie Kanayasu-Toyoda, Makoto Asashima, Hiromitsu Nakauchi, Teruhide Yamaguchi and Mahito Nakanishi
    Journal of Biological Chemistry 2010.12.7 Online (doi:10.1074/jbc.M110.183780)
  89. Transient activation of c-MYC expression is critical for efficient platelet generation from human induced pluripotent stem cells
    Naoya Takayama, Satoshi Nishimura, Sou Nakamura, Takafumi Shimizu, Ryoko Ohnishi, Hiroshi Endo, Tomoyuki Yamaguchi, Makoto Otsu, Ken Nishimura, Mahito Nakanishi, Akira Sawaguchi, Ryozo Nagai, Kazutoshi Takahashi, Shinya Yamanaka, Hiromitsu Nakauchi, and Koji Eto
    Journal of Experimental Medicine 207(13), 2817-2830, 20 December 2010
  90. Regulation of Nucleolar Chromatin by B23/Nucleophosmin Jointly Depends upon Its RNA Binding Activity and Transcription Factor UBF
    Miharu Hisaoka, Shuhei Ueshima, Kensaku Murano, Kyosuke Nagata, and Mitsuru Okuwaki
    Molecular and Cellular Biology, October 2010, p. 4952-4964, Vol. 30, No. 20
  91. Dual functions of yeast tRNA ligase in the unfolded protein response: unconventional cytoplasmic splicing of HAC1 pre-mRNA is not sufficient to release translational attenuation.
    Ogasawara, Toshifumi Inada, Markus Englert, Hildburg Beier, Mine Takezawa, Toshiya Endo, and Tohru Yoshihisa
    Molecular Biology of the Cell Vol. 21, Issue 21, 3722-3734, November 1, 2010
  92. The Matrix Protein hnRNP U Is Required for Chromosomal Localization of Xist RNA.
    Hasegawa Y, Brockedorff N, Kawano S, Tsutui K, Tsutui K, Nakagawa S
    Developmental Cell, Volume 19, Issue 3, 469-476, 14 September 2010
  93. Differential Replication of Two Chloroplast Genome Forms in Heteroplasmic Chlamydomonas reinhardtii Gametes Contributes to Alternate Inheritance Patterns.
    Yoshiki Nishimura, David B Stern
    Genetics 185, 1167-81, 2010
  94. Diazirine-containing RNA photocrosslinking probes for the study of siRNA-protein interactions
    Satoru Kuboe, Mayuko Yoda, Aya Ogata, Yukio Kitade, Yukihide Tomari and Yoshihito Ueno
    Chem. Commun., 2010, 46, 7367-7369
  95. Water-Soluble Doubly N-Confused Hexaphyrin: A Near-IR Fluorescent Zn(II) Ion Sensor in Water
    Ikawa, Y.; Takeda, M.; Suzuki, M.; Osuka, A.; Furuta, H.
    Chem. Commun. 2010, 46, 5689 - 5691
  96. Assembly of Qbeta viral RNA polymerase with host translational elongation factors EF-Tu and -Ts
    Daijiro Takeshita and Kozo Tomita
    PNAS September 7, 2010 vol. 107 no. 36 15733-15738
  97. Visualization and genetic analysis of alternative splicing regulation in vivo using fluorescence reporters in transgenic Caenorhabditis elegans
    Hidehito Kuroyanagi,Genta Ohno,Hiroaki Sakane,Hiroyuki Maruoka& Masatoshi Hagiwara
    Nature Protocols Volume 5 Pages 1495–1516 (2010) DOI doi:10.1038/nprot.2010.107
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    Biochimie 90(6), 898-907, 2008
  174. Lilliputians get into the limelight - novel class of small peptide genes in morphogenesis
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    Development, Growth & Differentiation 50, S269-276, 2008
  175. Selection of a novel class of RNA RNA interaction motifs based on the ligase ribozyme with defined modular architecture
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