Kazuhiro Yamada

「Kazuhiro Yamada」
Degree
Ph.D.
Position, Research site
JST/PRESTO Researcher(Max-Planck-Institute for Medical Research, Heidelberg)
URL
http://www.mol.biol.ethz.ch/groups/richmond/members/yamada
Research Field
Chromatin structural biology

Publication

  1. Yamada K. Structural analysis for molecular dynamics of chromatin remodeling factor ISW1a 生物物理 2013, 53(1): 28-31. review
  2. Yamada K., Frouws T.D., Angst B., & amp; Richmond T.J. Structure and mechanism of the chromatin remodelling factor ISW1a 実験医学 2011, 29(19): 3145-8. review
  3. Yamada K., Frouws T.D., Angst B., Fitzgerald D.J., DeLuca C., Schimmele K., Sargent D.F. & amp; Richmond T.J. Structure and mechanism of the chromatin remodelling factor ISW1a Nature 2011, 472 (7344): 448-53
  4. Fischer C.J., Yamada K. & Fitzgerald D.J. Kinetic mechanism for sungle-stranded DNA binding and translocation by Saccharomyces cerevisiae Isw2. Biochemistry 2009, 48 (13): 2960-8.
  5. Fitzgerald D.J., Berger P., Schaffitzel C., Yamada K., Richmond T.J. & Berger I. Protein complex expression by using multigene baculoviral vectors. Nat.Methods 2006, 3 (12): 1021-32
  6. Yamada K., Ariyoshi, M. & Morikawa, K. Three-dimensional structural views of branch migration and resolution in DNA homologous recombination. Curr.Opin.Struct.Biol. 2004, 14 (2): 130-7. review
  7. Yamada K. & Morikawa, K. Three-dimensional structural view of mechanism of Holliday junction migration 生化学 2002 74(10): 1251-9. review
  8. Yamada K., Miyata T., Tsuchiya D. Oyama T., Fujiwara Y., Ohnishi T., Iwasaki H., Shinagawa H., Ariyoshi M., Mayanagi K. & Morikawa K. Crystal structure of the RuvA-RuvB complex: a structural basis for the Holliday junction migrating motor machinery. Mol.Cell 2002, 10 (3): 671-81.
  9. Ariyoshi M., Yamada K. and Iwasaki H. Structural biology of Holliday junction processing catalyzed by RuvABC resolvasome 蛋白質核酸酵素 2001, 46(11): 1625-34. review
  10. Han Y.W., Iwasaki H., Miyata T., Mayanagi K., Yamada K., Morikawa K. & Shinagawa H. A unique beta-hairpin protruding from AAA+ ATPase domain of RuvB motor protein is involved in the interaction with RuvA DNA recognition protein for branch migration of Holliday junctions. J.Biol.Chem. 2001, 276 (37): 35024-8.
  11. Yamada K., Kunishima N., Mayanagi K., Ohnishi T., Nishino T., Iwasaki H., Shinagawa H. & Morikawa K. Crystal structure of the Holliday junction migration motor protein RuvB from Thermus thermophilus HB8. Proc.Natl.Acad.Sci.USA. 2001, 98 (4): 1442-7.
  12. Miyata T., Yamada K., Iwasaki H., Shinagawa h., Morikawa K. & Mayanagi K. Two different oligomeric states of the RuvB branch migration motor protein as revealed by electron microscopy. J.Struct.Biol. 2000, 131 (2): 83-9.
  13. Iwasaki H., Han Y.W., Okamoto T., Ohnishi T., Yoshikawa M., Yamada K., Toh H., Daiyasu H., Ogura T. & Shinagawa H. Mutational analysis of the functional motifs of RuvB, an AAA+ class helicase and motor protein for holliday junction branch migration. Mol.Microbiol. 2000, 36 (3): 528-38.
  14. Yamada K., Fukuoh A., Iwasaki H. & Shinagawa H. Novel properties of the Thermus thermophilus RuvB protein, which promotes branch migration of Holliday junctions. Mol.Gen.Genet. 1999, 261 (6): 1001-11.