[Aoki Yuichi] Development of pairwise deep learning architectures for the modeling of gene-gene interactions

Researcher

Aoki Yuichi

Aoki Yuichi

Tohoku University
Tohoku Medical Megabank Organization
Assistant Professor

Website

Outline

This research aims to develop a new deep learning architecture for the modeling of gene-gene interactions, such as gene co-expression and protein-protein interactions. We try to modify the conventional deep neural network model to allow it: (1) to accept two inputs (two feature vectors for any gene pair) and (2) to capture important feature similarities automatically. The developed model will contribute not only to medical/agricultural applications such as genomic medicine and crop breeding, but also to knowledge acquisition from big data in various non-biological fields.

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