Publications
- Marine Sponge Cyclic Peptide Theonellamide A Disrupts Lipid Bilayer Integrity without Forming Distinct Membrane Pores
Rafael Atillo Espiritu, Kimberly Cornelio, Masanao Kinoshita, Nobuaki Matsumori, Michio Murata, Shinichi Nishimura, Hideaki Kakeya, Minoru Yoshida, Shigeki Matsunaga
Biochimica et Biophysica Acta (BBA) - Biomembranes, 2016, inpress. DOI: 10.1016/j.bbamem.2016.03.019
- Formation of Gel-like Nanodomains in Cholesterol-Containing Sphingomyelin or Phosphatidylcholine Binary Membrane as Examined by Fluorescence Lifetimes and 2H NMR Spectra
Tomokazu Yasuda, Nobuaki Matsumori, Hiroshi Tsuchikawa, Max Lönnfors, Thomas Kaj Mikael Nyholm, J.Peter Slotte, and Michio Murata
Langmuir, 2015 (31) , 13783-13792, DOI: 10.1021/acs.langmuir.5b03566
- 13C-TmDOTA as versatile thermometer compound for solid-state NMR of hydrated lipid bilayer membranes
Yuichi Umegawa, Yuya Tanaka, Matsumori Nobuaki, Michio Murata
Magn. Reson. Chem., 2016(3) , 227-233, DOI: 10.1002/mrc.4371
- Stereoselective synthesis of the head group of archaeal phospholipid PGP-Me to investigate bacteriorhodopsin-lipid interactions
Jin Cui, Satoshi Kawatake, Yuichi Umegawa, Sébastien Lethu, Masaki Yamagami, Shigeru Matsuoka, Fuminori Sato, Nobuaki Matsumori, Michio Murata
Org. Biomol. Chem., 2015(13) , 10279-10284, DOI: 10.1039/C5OB01252J
- Role of polyol moiety of amphotericin B in ion channel formation and sterol selectivity in bilayer membrane
Tomoya Yamamoto, Yuichi Umegawa, Hiroshi Tsuchikawa, Nobuaki Matsumori, Shinya Hanashima, Michio Murata, Resul Haser, Bernard J. Rawlings, Patrick Caffrey
Bioorg. Med. Chem. 2015,23(17), 5782-5788, DOI: 10.1016/j.bmc.2015.07.009
- Bioactive structure of membrane lipids and natural products elucidated by a chemistry-aased Approach
Michio Murata, Shigeru Sugiyama, Shigeru Matsuoka, Nobuaki Matsumori
Chem. Rec. published online: 30 JUN 2015. DOI:10.1002/tcr.201402097
- Development of protein seed crystals reinforced with high-strength hydrogels
Shigeru Sugiyama, Noriko Shimizu, Keisuke Kakinouchi, Osamu Hiraoka, Hiroyoshi Matsumura, Hiroshi Y. Yoshikawa, Yoshinori Takahashi, Mihoko Maruyama, Masashi Yoshimura, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Michio Murata, Yusuke Mori
CrystEngComm, 2015 (17), 8064-8071, DOI: 10.1039/C5CE00844A
- Centerband-only analysis of rotor-unsynchronized spin-echo for measurement of lipid 31P chemical shift anisotropy
Yuichi Umegawa, Toshiyuki Yamaguchi, Michio Murata, Shigeru Matsuoka
Magn. Reson. Chem. 2015, 53(7), 514-519, DOI: 10.1002/mrc.4247
- Deuterium NMR of raft model membranes reveals domain-specific order profiles and compositional distribution
Tomokazu Yasuda, Hiroshi Tsuchikawa, Michio Murata, Nobuaki Matsumori
Biophys. J. 2015, 108 (10), 2502-2506, DOI:10.1016/j.bpj.2015.04.008
- Orientation order of the amide group of sphingomyelin in bilayers determined by solid-state NMR
Nobuaki Matsumori, Toshiyuki Yamaguchi, Yoshiko Maeta, Michio Murata
Biophys. J. 2015, 108 (12), 2816-2824, DOI:10.1016/j.bpj.2015.05.011
- Novel Raman-Tagged Sphingomyelin that Closely Mimics Original Raft-Forming Behavior
Jin Cui, Shigeru Matsuoka, Masanao Kinoshita, Nobuaki Matsumori, Fuminori Sato, Michio Murata, Jun Ando, Kosuke Dodo, Mikiko Sodeoka
Biorg. Med. Chem. 2015, 23 (13), 2989-2994, DOI:10.1016/j.bmc.2015.05.014
- Sphingomyelin distribution in lipid rafts of artificial monolayer membranes visualized by raman microscopy
Jun Ando, Masanao Kinoshita, Jin Cui, Hiroyuki Yamakoshi, Kosuke Dodo Katsumasa Fujita, Michio Murata, Mikiko Sodeoka
Proc. Natl. Acad. Sci. USA 2015, 112 (15) 4558-4563. DOI:10.1073/pnas.1418088112
- Modification of bafilomycin structure to efficiently synthesize solid-state NMR probes that selectively bind to vacuolar-type ATPase
Hajime Shibata, Hiroshi Tsuchikawa, Tatsuru Hayashi, Nobuaki Matsumori, Michio Murata, Takeo Usui
Chem. Asian J. 2015, 10 (4) 915-924. DOI: 10.1002/asia.201403299
- Trifloroethnol-containing RP-HPLC mobile phases for transmembrane peptide human Glycophorin-A, integrin alpha-1, and p24, analysis and prevention of potential side reaction due to formic acid
Toshiaki Hara, Yue Huang, Akihiro Ito, Toru Kawakami, Hironobu Honjo, Michio Murata
J. Pept. Sci. 2015, 21(2), 61-70. DOI: 10.1002/psc.2717
- Water-mediated recognition of simple alkyl chains by heart-type fatty acid-binding protein
Shigeru Matsuoka, Shigeru Sugiyama, Daisuke Matsuoka, Mika Hirose, Sebastien Lethu, Hikaru Ano, Toshiaki Hara, Osamu Ichihara, S. Roy Kimura, Satoshi Murakami, Hanako Ishida, Eiichi Mizohata, Tsuyoshi Inoue, Michio Murata
Angew. Chem. Int. Ed. 2015, 54(5) 1508-1511. DOI: 10.1002/anie.201409830
- Molecular dynamics simulations of heart-type fatty acid-binding protein in apo and holo forms, and hydration structure analyses in the binding cavity
Daisuke Matsuoka, Shigeru Sugiyama, Michio Murata, Shigeru Matsuoka
J. Phys. Chem. B. 2015, 119 (1), 114-127. DOI: 10.1021/jp510384f
- Phosphatidylcholine bearing 6', 6'-didueterated oleic acid, a useful solid-state 2H NMR probe for investigating membrane properties
Jin Cui, Sebastian Lethu, Tomokazu Yasuda, Shigeru Matsuoka, Nobuaki Matsumori, Fuminori Sato, Michio Murata
Bioorg. Med. Chem. 2015, 25(2), 203-206. DOI: 10.1016/j.bmcl.2014.11.072
- Synthesis and biological evaluation of QRSTUVWXYZA′ domains of maitotoxin
Kyriacos C. Nicolaou, Philipp Heretsch, Tsuyoshi Nakamura, Anna Rudo, Michio Murata, Keiichi Konoki
J. Am. Chem. Soc. 2014, 136(46), 16444-16451. DOI: 10.1021/ja509829e
- Grease matrix as a versatile carrier of proteins for serial crystallography
Michihiro Sugahara, Eiichi Mizohata, Eriko Nango, Mamoru Suzuki, Tomoyuki Tanaka, Tetsuya Masuda, Rie Tanaka, Tatsuro Shimamura, Yoshiki Tanaka, Chiyo Suno, Kentaro Ihara, Dongqing Pan, Keisuke Kakinouchi, Shigeru Sugiyama, Michio Murata, Tsuyoshi Inoue, Kensuke Tono, Changyong Song, Jaehyun Park, Takashi Kameshima, Takaki Hatsui, Yasumasa Joti, Makina Yabashi, So Iwata
Nature Methods, 2015, 12, 61-63 DOI: 10.1038/nmeth.3172
- Crystallization and preliminary crystallographic studies of PotA, a membrane-associated ATPase of the spermidine-preferential uptake system in Thermotoga maritima
Shigeru Sugiyama, Keiko Kashiwagi, Keisuke Kakinouchi, Hideyuki Tomitori, Ken Kanai, Michio Murata, Hiroaki Adachi, Hiroyoshi Matsumura, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Kazuei Igarashi
Acta Cryst. 2014, F70, 738-741. DOI: 10.1107/S2053230X14008607
- Interaction analysis of a ladder-shaped polycyclic ether and model transmembrane peptides in lipid bilayers by using Forster resonance energy transfer and polarized attenuated total reflection infrared spectroscopy
Kazuya Yamada, Haruki Kuriyama, Toshiaki Hara, Michio Murata, Raku Irie, Yanit Harntaweesup, Masayuki Satake, Seketsu Fukuzawa, Kazuo Tachibana
Bioorg. Med. Chem. 2014, 22(14), 3773-3780. DOI: 10.1016/j.bmc.2014.04.044
- Direct and stereospecific interaction of amphidinol 3 with sterol in lipid bilayers
Rafael Atillo Espiritu, Nobuaki Matsumori, Masashi Tsuda, Michio Murata
Biochemistry 2014, 53(20), 3287-3293. DOI: 10.1021/bi5002932
- Interaction kinetics of liposome-incorporated unsaturated fatty acids with fatty acid-binding protein 3 by surface plasmon resonance
Maria C. Tan, Shigeru Matsuoka, Hikaru Ano, Hanako Ishida, Mika Hirose, Fuminori Sato, Shigeru Sugiyama, Michio Murata
Bioorg. Med. Chem. 2014, 22, 1804-1808. DOI: 10.1016/j.bmc.2014.02.001
- Coexistence of two liquid crystalline phases in dihydrosphingomyelin and dioleoylphosphatidylcholine binary mixtures
Masanao Kinoshita, Nobuaki Matsumori, Michio Murata
Biochim. Biophys. Acta. 2014, 1838(5), 1372-1381. DOI: 10.1016/j.bbamem.2014.01.017
- Detailed comparison of deuterium quadrupole profiles between sphingomyelin and phosphatidylcholine bilayers
Tomokazu Yasuda, Masanao Kinoshita, Michio Murata, Nobuaki Matsumori
Biophys. J. 2014, 106 (3), 631-638. DOI: 10.1016/j.bpj.2013.12.034
- Highly efficient preparation of selectively isotope cluster-labeled long chain fatty acids via two consecutive Csp3-Csp3 cross-coupling reactions
Sebastien Lethu, Shigeru Matsuoka, Michio Murata
Org. Lett. 2014, 16 (3), 844-847. DOI: 10.1021/ol4036159
- Design and synthesis of 24-fluorinated Bafilomycin analogue as an NMR Probe with potent inhibitory activity tovacuolar-type ATPase
Hajime Shibata, Hiroshi Tsuchikawa, Nobuaki Matsumori, Michio Murata, Takeo Usui
Chem. Lett. 2014, 43, 474-476. DOI: 10.1246/cl.131099
- Structure of the human-heart fatty-acid-binding protein 3 in complex with the fluorescent probe 1-anilinonaphthalene-8-sulphonic acid
Mika Hirose, Shigeru Sugiyama, Hanako Ishida, Mayumi Niiyama, Daisuke Matsuoka, Toshiaki Hara, Eiichi Mizohata, Satoshi Murakami, Tsuyoshi Inoue, Shigeru Matsuoka, Michio Murata
J. Synchrotron Rad. 2013, 20, 923-928. DOI: 10.1107/S0909049513021298
- Expression, purification, crystallization and preliminary crystallographic analysis of spermidine acetyltransferase from Escherichia coli
Mayumi Niiyama, Shigeru Sugiyama, Mika Hirose, Sae Ishikawa, Hideyuki Tomitori, Kyohei Higashi, Tomoko Yamashita, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Michio Murata, Tsuyoshi Inoue, Yusuke Mori, Keiko Kashiwagi, Hiroyoshi Matsumura, Kazuei. Igarashi
Acta Cryst. 2013, F69, 884-887, DOI: 10.1107/S1744309113017132
- Characterization of the ordered phase formed by sphingomyelin analogues and cholesterol binary mixtures
Masanao Kinoshita, Sarah Goretta, Hiroshi Tsuchikawa, Nobuaki Matsumori, Michio Murata
Biophysics 2015, 9, 37-49, DOI:10.2142/biophysics.9.37
- Synthesis and structure revision of the C43-C67 Part of Amphidinol 3
Makoto Ebine, Mitsunori Kanemoto, Yoshiyuki Manabe, Yosuke Konno, Ken Sakai, Nobuaki Matsumori, Michio Murata, Tohru Oishi
Org Lett. 2013, 15(11), 2846-2849. DOI: 10.1021/ol401176a
- Confirmation of the absolute configuration at C45 of Amphidinol 3
Yoshiyuki Manabe, Makoto Ebine, Nobuaki Matsumori, Michio Murata, Tohru Oishi
J. Nat. Prod. 2012, 75(11), 2003-2006. DOI: 10.1021/np300604w
- Comprehensive molecular motion capture for sphingomyelin by site-specific deuterium labeling
Nobuaki Matsumori, Tomokazu Yasuda, Hiroki Okazaki, Takashi Suzuki, Toshiyuki Yamaguchi, Hiroshi Tsuchikawa, Mototsugu. Doi, Tohru Oishi, Michio Murata
Biochemistry. 2012, 51(42), 8363-8370. DOI: 10.1021/bi3009399
- Effects of chemical modification of sphingomyelin ammonium group on formation of liquid-ordered phase
Sarah A. Goretta, Masanao Kinoshita, Shoko Mori, Hiroshi Tsuchikawa, Nobuaki Matsumori, Michio Murata
Bioorg. Med. Chem. 2012, 20(13), 4012-4019. DOI: 10.1016/j.bmc.2012.05.015
- Short polyglutamine peptide forms a high-affinity binding site for thioflavin-T at the N-terminus
Shigeru Matsuoka, Motoki Murai, Toshio Yamazaki and Masayuki Inoue
Org. Biomol. Chem. 2012, 10(30), 5787-5790. DOI: 10.1039/c2ob07157f
- NMR-based conformational analysis of sphingomyelin in bicelles
Toshiyuki Yamaguchi, Takashi Suzuki, Tomokazu Yasuda, Tohru Oishi, Nobuaki Matsumori, Michio Murata
Bioorg. Med. Chem. 2012, 20(1), 270-278. DOI: 10.1016/j.bmc.2011.11.001
