Research projects selected in 2009 FY

Hitoshi Okamoto

Takekawa T, Isomura Y, Fukai T (2010) Accurate spike sorting for multi-unit recordings. Eur J Neurosci 31:263-272. (DOI:10.1111/j.1460-9568.2009.07068.x)

Amo R, Aizawa H, Takahoko M, Kobayashi M, Takahashi R, Aoki T, Okamoto H (2010) Identification of the Zebrafish Ventral Habenula As a Homolog of the Mammalian Lateral Habenula. J Neurosci 30:1566-1574. (DOI:10.1523/JNEUROSCI.3690-09.2010)

Nakae K, Iba Y, Tsubo Y, Fukai T, Aoyagi T (2010) Bayesian estimation of phase response curves. Neural Netw 23:752-763. (DOI:10.1016/j.neunet.2010.04.002)

Safonov LA, Isomura Y, Kang S, Struzik ZR, Fukai T, Cateau H (2010) Near scale-free dynamics in neural population activity of waking/sleeping rats revealed by multiscale analysis. PLoS ONE 5:e12869. (DOI:10.1371/journal.pone.0012869)

Agetsuma M, Aizawa H, Aoki T, Nakayama R, Takahoko M, Goto M, Sassa T, Amo R, Shiraki T, Kawakami K, Hosoya T, Higashijima S, Okamoto H (2010) The habenula is crucial for experience-dependent modification of fear responses in zebrafish. Nat Neurosci 13:1354-1356. (DOI:10.1038/nn.2654)
Press release from RIKEN

Kimura R, Kang S, Takahashi N, Usami A, Matsuki N, Fukai T, Ikegaya Y (2011) Hippocampal polysynaptic computation. J Neurosci 31:13168-13179. (DOI:10.1523/JNEUROSCI.1920-11.2011)

Gilson M, Fukai T (2011) Stability versus neuronal specialization for STDP: long-tail weight distributions solve the dilemma. PLoS One 6:e25339-1-e25339-18. (DOI:10.1371/journal.pone.0025339)

Igarashi J, Shouno O, Fukai T, Tsujino H (2011) Real-time simulation of a spiking neural network model of the basal ganglia circuitry using general purpose computing on graphics processing units. Neural Netw 24:950-960. (DOI:10.1016/j.neunet.2011.06.008)

Takekawa T, Isomura Y, Fukai T (2012) Spike sorting of heterogeneous neuron types by multimodality-weighted PCA and explicit robust variational Bayes Front Neuroinform 6:5. (DOI:10.3389/fninf.2012.00005)

Fujita T, Fukai T, Kitano K (2012) Influences of membrane properties on phase response curve and synchronization stability in a model globus pallidus neuron. J Comput Neurosci 32:539-553. (DOI:10.1007/s10827-011-0368-2)

Okamoto H, Agetsuma M, Aizawa H. (2012) Genetic dissection of the zebrafish habenula, a possible switching board for selection of behavioral strategy to cope with fear and anxiety. Dev Neurobiol. 72:386-394. (DOI:10.1002/dneu.20913)

Teramae J, Tsubo Y, Fukai T (2012) Optimal spike-based communication in excitable networks with strong-sparse and weak-dense links. Scientific Reports 2:1-6. (DOI:10.1038/srep00485)

Kai T, Burkitt AN (2012) Spectral Analysis of Input Spike Trains by Spike-Timing-Dependent Plasticity. PLoS Comput Biol 8:e1002584 1-22. (DOI:10.1371/journal.pcbi.1002584)

Aizawa H, Kobayashi M, Tanaka S, Fukai T, Okamoto H (2012) Molecular characterization of the subnuclei in rat habenula. J Comp Neurol 520:4051-4066. (DOI:10.1002/cne.23167)

Hiratani N, Teramae J, Fukai T (2013) Associative memory model with long-tail-distributed Hebbian synaptic connections. Frontiers in Computational Neuroscience 6:1-15 (DOI:10.3389/fncom.2012.00102)

Tsubo Y, Isomura Y, Fukai T (2013) Passage-time coding with timing kernel inferred from irregular cortical spike sequences. J Statistical Mechanics:Theory and Experiment(JSTAT). P03004: 1-21 (DOI:10.1088/1742-5468/2013/03/P03004)

Aoki T, Kinoshita M, Aoki R, Agetsuma M, Aizawa H, Yamazaki M, Takahoko M, Amo R, Arata A, Higashijima S, Tsuboi T, Okamoto H (2013) Imaging of Neural Ensemble for Retrieval of a Learned Behavioral Program, Neuron. accepted
Press release from RIKEN

Aizawa H, Yanagihara S, Kobayashi M, Niisato K, Takekawa T, Harukuni R, McHugh TJ, Fukai T, Isomura Y, Okamoto H (2013) The synchronous activity of lateral habenular neurons is essential for regulating hippocampal theta oscillation. J Neurosci. accepted

Yasuo Kawaguchi

Puig MV, Watakabe A, Ushimaru M, Yamamori T, Kawaguchi Y (2010) Serotonin modulates fast-spiking interneuron and synchronous activity in the rat prefrontal cortex through 5-HT1A and 5-HT2A receptors. J Neurosci 30:2211-2222. (DOI:10.1523/JNEUROSCI.3335-09.2010)

Otsuka T, Kawaguchi Y (2011) Cell diversity and connection specificity between callosal projection neurons in the frontal cortex. J Neurosci 31:3862-3870. (DOI:10.1523/JNEUROSCI.5795-10.2011)

Kuramoto E, Fujiyama F, Nakamura KC, Tanaka Y, Hioki H, Kaneko T (2011) Complementary distribution of glutamatergic cerebellar and GABAergic basal ganglia afferents to the rat motor thalamic nuclei. Eur J Neurosci 33:95-109. (DOI:10.1111/j.1460-9568.2010.07481.x)

Kubota Y, Shigematsu N, Karube F, Sekigawa A, Kato S, Yamaguchi N, Hirai Y, Morishima M, Kawaguchi Y (2011) Selective coexpression of multiple chemical markers defines discrete populations of neocortical GABAergic neurons. Cereb Cortex 21:1803-1817. (DOI:10.1093/cercor/bhq252)

Fujiyama F, Sohn J, Nakano T, Furuta T, Nakamura KC, Matsuda W, Kaneko T (2011) Exclusive and common targets of neostriatofugal projections of rat striosome neurons: a single neuron-tracing study using a viral vector. Eur J Neurosci 33:668-677. (DOI:10.1111/j.1460-9568.2010.07564.x)

Chen JL, Lin WC, Cha JW, So PT, Kubota Y, Nedivi E (2011) Structural basis for the role of inhibition in facilitating adult brain plasticity. Nat Neurosci 14:587-594. (DOI:10.1038/nn.2799)

Morishima M, Morita K, Kubota Y, Kawaguchi Y (2011) Highly differentiated projection-specific cortical subnetworks. J Neurosci 31:10380-10391. (DOI:10.1523/JNEUROSCI.0772-11.2011)

Kubota Y, Karube F, Nomura M, Gulledge AT, Mochizuki A, Schertel A, Kawaguchi Y (2011) Conserved properties of dendritic trees in four cortical interneuron subtypes. Sci Rep 1:89. (DOI:10.1038/srep00089)
Press release from NIPS

Tanaka YH, Tanaka YR, Fujiyama F, Furuta T, Yanagawa Y, Kaneko T (2011) Local connections of layer 5 GABAergic interneurons to corticospinal neurons. Front Neural Circuits 5:12. (DOI:10.3389/fncir.2011.00012)

Tanaka YR, Tanaka YH, Konno M, Fujiyama F, Sonomura T, Okamoto-Furuta K, Kameda H, Hioki H, Furuta T, Nakamura KC, Kaneko T (2011) Local connections of excitatory neurons to corticothalamic neurons in the rat barrel cortex. J Neurosci 31:18223-18236.(DOI:10.1523/JNEUROSCI.3139-11.2011)

Shino M, Kaneko R, Yanagawa Y, Kawaguchi Y, Saito Y (2011) Electrophysiological characteristics of inhibitory neurons of the prepositus hypoglossi nucleus using Venus-expressing transgenic rats. Neuroscience 197:89-98. (DOI:10.1016/j.neuroscience.2011.09.017)

Ushimaru M, Ueta Y, Kawaguchi Y (2012) Differentiated participation of thalamocortical subnetworks in slow/spindle waves and desynchronization. J Neurosci 32:1730-1746. (DOI:10.1523/JNEUROSCI.4883-11.2012)

Hirai Y, Morishima M, Karube F, Kawaguchi Y (2012) Specialized cortical subnetworks differentially connect frontal cortex to parahippocampal areas. J Neurosci 32:1898-1913. (DOI:10.1523/JNEUROSCI.2810-11.2012)

Chen JL, Villa KL, Cha JW, So PT, Kubota Y, Nedivi E (2012) Clustered dynamics of inhibitory synapses and dendritic spines in the adult neocortex. Neuron 74 361-373. (DOI:10.1016/j.neuron.2012.02.030)

Morita K, Morishima M, Sakai K, Kawaguchi Y (2012) Reinforcement learning: computing the temporal difference of values via distinct corticostriatal pathways. (Opinion article) Trends Neurosci 35:457-467. (DOI:10.1016/j.tins.2012.04.009)

Ohno S, Kuramoto E, Furuta T, Hioki H, Tanaka YR, Fujiyama F, Sonomura T, Uemura M, Sugiyama K, Kaneko T (2012) Morphological analysis of thalamocortical axon fibers of rat posterior thalamic nuclei: A single neuron tracing study with viral vectors. Cereb Cortex 22:2840-2857. (DOI:10.1093/cercor/bhr356)

Hatanaka Y, Yamauchi K (2013) Excitatory cortical neurons with multipolar shape establish neuronal polarity by forming a tangentially oriented axon in the intermediate zone. Cereb Cortex 23:105-113. (DOI:10.1093/cercor/bhr383)

Hioki H, Okamoto S, Konno M, Kameda H, Sohn J, Kuramoto E, Fujiyama F, Kaneko T (2013) Cell Type-Specific Inhibitory Inputs to Dendritic and Somatic Compartments of Parvalbumin-Expressing Neocortical Interneuron. J Neurosci 33:544-555. (DOI:10.1523/JNEUROSCI.2255-12.2013)

DeFelipe J, López-Cruz PL, Benavides-Piccione R, Bielza C, P Larrañaga, Anderson S, Burkhalter A, Cauli B, Fairén A, Feldmeyer D, Fishell G, Fitzpatrick D, Freund TF, González-Burgos G, Hestrin S, Hill S, Hof PR, Huang J, Jones EG, Kawaguchi Y, Kisvárday Z, Kubota Y, Lewis DA, Marín O, Markram H, McBain CJ, Meyer HS, Monyer H, Nelson SB, Rockland K, Rossier J, Rubenstein JLR, Rudy B, Scanziani M, Shepherd GM, Sherwood CC, Staiger JF, Tamás G, Thomson A, Wang Y, Yuste R, Ascoli GA (2013) New insights into the classification and nomenclature of cortical GABAergic interneurons (Analysis paper). Nature Rev Neurosci 14:202-216. (DOI:10.1038/nrn3444)

Koshimizu Y, Fujiyama F, Nakamura KC, Furuta T, Kaneko T (2013) A quantitative analysis of axon bouton distribution of subthalamic nucleus neurons in the rat by single neuron visualization with a viral vector. J Comp Neurol, in press.

Ueta Y, Otsuka T, Morishima M, Ushimaru M, Kawaguchi Y (2013) Multiple layer 5 pyramidal cell subtypes relay cortical feedback from secondary to primary motor areas in rats. Cereb Cortex: in press.

Yukiko Gotoh

Kuwahara A, Hirabayashi Y, Knoepfler PS, Taketo MM, Sakai J, Kodama T, Gotoh Y (2010) Wnt signaling and its downstream target N-myc regulate basal progenitors in the developing neocortex. Development 137:1035-1044. (DOI:10.1242/dev.046417)

Ip JP, Shi L, Chen Y, Itoh Y, Fu WY, Betz A, Yung WH, Gotoh Y, Fu AK, Ip NY (2011) α2-chimaerin controls neuronal migration and functioning of the cerebral cortex through CRMP-2. Nat Neurosci 15:39-47. (DOI:10.1038/nn.2972)

Watatani K, Hirabayashi Y, Itoh Y, Gotoh Y (2012) PDK1 regulates the generation of oligodendrocyte precursor cells at an early stage of mouse telencephalic development. Genes Cells. 17:326-335. (DOI:10.1111/j.1365-2443.2012.01591.x)

Kishi Y, Fujii Y, Hirabayashi Y, Gotoh Y (2012) HMGA proteins regulate global chromatin state and the neurogenic potential in neocortical precursor cells. Nat Neurosci 15:1127-1133. (DOI:10.1038/nn.3165)

Onoguchi M, Hirabayashi Y, Koseki H, Gotoh Y (2012) A noncoding RNA regulates the neurogenin1 gene locus during mouse neocortical development. Proc Natl Acad Sci USA 109:16939-16944. (DOI:10.1073/pnas.1202956109)

Aoki I, Higuchi M, Gotoh Y (2012) NEDDylation controls the target specificity of E2F1 and apoptosis induction. Oncogene 20:1-11. (DOI:10.1038/onc.2012.428)

Higuchi M, Kihara R, Okazaki T, Aoki I, Suetsugu S, Gotoh Y (2013) Akt1 promotes focal adhesion disassembly and cell motility through phosphorylation of FAK in growth factor-stimulated cells. J Cell Sci 126:745-755. (DOI:10.1242/jcs.112722)

Itoh Y, Moriyama Y, Hasegawa T, Endo TA, Toyoda T, Gotoh Y (2013) Scratch regulates neuronal migration onset via an epithelial-mesenchymal transition-like mechanims. Nat Neurosci 16:416-425. (DOI:10.1038/nn.3336)

Fujii Y, Kishi Y Gotoh Y (2013) IMP2 regulates differentiation potentials of mouse neocortical neural precursor cells. Genes Cells 18:79-89. (DOI:10.1111/gtc.12024)

Furutachi S, Matsumoto A, Nakayama KI, Gotoh Y (2013) p57 controls adult neural stem cell quiescence and modulates the pace of lifelong neurogenesis. EMBO J 32:970-981. (DOI:10.1038/emboj.2013.50)

Kawaguchi D, Furutachi S, Kawai H, Hozumi K, Gotoh Y (2013) Dll1 maintains quiescence of adult neural stem cells and segregates asymmetrically during mitosis. Nat Commun (in press)

Tomoyuki Takahashi

Watanabe H, Yamashita T, Saitoh N, Kiyonaka S, Iwamatsu A, Campbell KP, Mori Y, Takahashi T (2010) Involvement of Ca2+ channel synprint site in synaptic vesicle endocytosis. J Neurosci 30:655-660. (DOI:10.1523/JNEUROSCI.3214-09.2010)

Yamashita T, Eguchi K, Saitoh N, von Gersdorff H, Takahashi T (2010) Developmental shift to a mechanism of synaptic vesicle endocytosis requiring nanodomain Ca2+. Nat Neurosci 13:838-844. (DOI:10.1038/nn.2576)
Press release from OIST, JST, Doshisha University

Eguchi K, Nakanishi S, Takagi H, Taoufiq Z, Takahashi T (2012) Maturation of a PKG-dependent retrograde mechanism for exo-endocytic coupling of synaptic vesicles. Neuron 74:517-529. (DOI:10.1016/j.neuron.2012.03.028)
Press release from OIST/a>

Hori T, Takahash T (2012) Kinetics of synaptic vesicle refilling with neurotransmitter glutamate. Neuron 76:511-517. (DOI:10.1016/j.neuron.2012.08.013)
Press release from OIST

Takahisa Furukawa

Nakamura M, Sanuki R, Yasuma RT, Onishi A, Nishiguchi MK, Koike C, Kadowaki M, Kondo M, Miyake Y, Furukawa T (2010) TRPM1 mutations are associated with the complete form of congenital stationary night blindness. Mol Vis 16:425-437. DOI:N/A

Koike C, Obara T, Uriu Y, Numata T, Sanuki R, Miyata K, Koyasu T, Ueno S, Funabiki K, Tani A, Ueda H, Kondo M, Mori Y, Tachibana M, Furukawa T (2010) TRPM1 is a component of the retinal ON bipolar cell transduction channel in the mGluR6 cascade. Proc Natl Acad Sci U S A 107:332-337. (DOI:10.1073/pnas.0912730107)

Katoh K, Omori Y, Onishi A, Sato S, Kondo M, Furukawa T (2010) Blimp1 suppresses Chx10 expression in differentiating retinal photoreceptor precursors to ensure proper photoreceptor development. J Neurosci 30:6515-6526. (DOI:10.1523/JNEUROSCI.0771-10.2010)

Arai I, Tanaka M, Tachibana M (2010) Active roles of electrically coupled bipolarcell network in the adult retina. J Neurosci 30:9260-9270. (DOI:10.1523/JNEUROSCI.1590-10.2010)

Kanagawa M, Omori Y, Sato S, Kobayashi K, Miyagoe-Suzuki Y, Takeda S, Endo T, Furukawa T, Toda T (2010) Post-translational maturation of dystroglycan is necessary for pikachurin binding and ribbon synaptic localization. J Biol Chem 285:31208-31216. (DOI:10.1074/jbc.M110.116343)

Krizaj D, Huang W, Furukawa T, Punzo C, Xing W (2010) Plasticity of TRPM1 expression and localization in the wild type and degenerating mouse retina. Vision Res 50:2460-2465. (DOI:10.1016/j.visres.2010.08.034)

Omori Y, Chaya T, Katoh K, Kajimura N, Sato S, Muraoka K, Ueno S, Koyasu T, Kondo M, Furukawa T (2010) Negative regulation of ciliary length by ciliary male germ cell-associated kinase (Mak) is required for retinal photoreceptor survival. Proc Natl Acad Sci U S A 107:22671-22676. (DOI:10.1073/pnas.1009437108)

Omori Y, Katoh K, Sato S, Muranishi Y, Chaya T, Onishi A, Minami T, Fujikado T, Furukawa T (2011) Analysis of transcriptional regulatory pathways of photoreceptor genes by expression profiling of the Otx2-deficient retina. PLoS ONE 6:e19685. (DOI:10.1371/journal.pone.0019685)

Kondo M, Sanuki R, Ueno S, Nishizawa Y, Hashimoto N, Ohguro H, Yamamoto S, Machida S, Terasaki H, Adamus G, Furukawa T (2011) Indentification of autoantibodies against TRPM1 in patients with paraneoplastic retinopathy associated with ON bipolar cell dysfunction. PLoS ONE 6:e19911. (DOI:10.1371/journal.pone.0019911)

Pearring J, Bojang Jr P, Shen Y, Koike C, Furukawa T, Nawy S, Gregg R (2011) A role for nyctalopin, a small leucine-rich repeat protein, in localizing the TRP melastatin 1 channel to retinal depolarizing bipolar cell dendrites. J. Neurosci 31:10060-10066. (DOI:10.1523/JNEUROSCI.1014-11.2011)

Sanuki R, Onishi A, Koike C, Muramatsu R, Watanabe S, Muranishi Y, Irie S, Ueno S, Koyasu T, Matsui R, Cherasse Y, Urade Y, Watanabe D, Kondo M, Yamashita T, Furukawa T (2011) miR-124a, is required for hippocampal axogenesis and retinal cone survival through Lhx2 suppression. Nat Neurosci 14:1125-1134. (DOI:10.1038/nn.2897)

Ogata-Iwao M, Inatani M, Iwao K, Takihara Y, Nakaishi-Fukuchi Y, Irie F, Sato S, Furukawa T, Yamaguchi Y, Tanihara H (2011) Heparan sulfate regulates intraretinal axon pathfinding by retinal ganglion cells. Invest Ophthalmol Vis Sci 52:6671-6679. (DOI:10.1167/iovs.11-7559)

Xu Y, Dhingra A, Fina M, Koike C, Furukawa T, Vardi N (2012) mGluR6 Deletion Renders the TRPM1 Channel in Retina Inactive. J Neurophysiol 107:948-957. (DOI:10.1152/jn.00933.2011)

Omori Y, Araki F, Chaya T, Kajimura N, Irie S, Terada K, Muranishi Y, Tsujii T, Ueno S, Koyasu T, Tamaki Y, Kondo M, Amano Sh, Furukawa T (2012) Presynaptic dystroglycan-pikachurin complex regulates the proper synaptic connection between retinal photoreceptor and bipolar cells. J Neurosci 32:6126-6137. (DOI:10.1523/JNEUROSCI.0322-12.2012)

Peachey NS, Pearring JN, Bojang P, Jr, Hirschtritt ME, Sturgill-Short G, Ray TA, Furukawa T, Koike C, Goldberg AF, Shen Y, McCall MA, Nawy S, Nishina PM, Gregg RG (2012) Depolarizing Bipolar Cell Dysfunction due to a Trpm1 Point Mutation. J Neurophysiol 108:2442-2451. (DOI:10.1152/jn. 00137.2012)

Watanabe S, Sanuki R, Ueno S, Koyasu T, Hasegawa T, Furukawa T (2013) Tropisms of AAV for subretinal delivery to the neonatal mouse retina and its application for in vivo rescue of developmental photoreceptor disorders. PLoS One 8:e54146. (DOI:10.1371/journal.pone.0054146)
Press release from Osaka University

Masanori Matsuzaki

Safonov LA, Isomura Y, Kang S, Struzik ZR, Fukai T, Cateau H (2010) Near scale-free dynamics in neural population activity of waking/sleeping rats revealed by multiscale analysis. PLoS ONE 5:e12869. (DOI:10.1371/journal.pone.0012869)

Fujiwara-Tsukamoto Y, Isomura Y, Imanishi M, Ninomiya T, Tsukada M, Yanagawa Y, Fukai T, Takada M (2010) Prototypic seizure activity driven by mature hippocampal fast-spiking interneurons. J Neurosci 30:13679-13689. (DOI:10.1523/JNEUROSCI.1523-10.2010)

Ako R, Wakimoto M, Ebisu H, Tanno K, Hira R, Kasai H, Matsuzaki M, Kawasaki H (2011) Simultaneous visualization of multiple neuronal properties with single-cell resolution in the living rodent brain. Mol Cell Neurosci 48:246-257. (DOI:10.1016/j.mcn.2011.08.005).

Kitamura K, Hausser M (2011) Dendritic calcium signaling triggered by spontaneous and sensory-evoked climbing fiber input to cerebellar Purkinje cells in vivo. J Neurosci 31:10847-10858. (DOI:10.1523/JNEUROSCI.2525-10.2011)

Takahashi N, Kitamura K, Matsuo N, Mayford M, Kano M, Matsuki N, Ikegaya Y (2012) Locally synchronized synaptic inputs. Science 335:353-356. (DOI:10.1126/science.1210362)

Tsubo Y, Isomura Y, Fukai T (2012) Power-law inter-spike interval distributions infer a conditional maximization of entropy in cortical neurons. PLoS Comput Biol 8:e1002461. (DOI:10.1371/journal.pcbi.1002461)

Takekawa T, Isomura Y, Fukai T (2012) Spike sorting of heterogeneous neuron types by multimodality-weighted PCA and explicit robust variational Bayes. Front Neuroinform 6:5. (DOI:10.3389/fninf.2012.00005)

Kimura R, Saiki A, Fujiwara-Tsukamoto Y, Ohkubo F, Kitamura K, Matsuzaki M, Sakai Y, Isomura Y (2012) Reinforcing operandum: rapid and reliable learning of skilled forelimb movements by head-fixed rodents. J Neurophysiol 108:1781-1792. (DOI:10.1152/jn.00356.2012)

Hira R, Ohkubo F, Ozawa K, Isomura Y, Kitamura K, Kano M, Kasai H, Matsuzaki M (2013) Spatiotemporal dynamics of functional clusters of neurons in the mouse motor cortex during a voluntary movement. J Neurosci 33:1377-1390. (DOI:10.1523/JNEUROSCI.2550-12.2013)

Hira R, Ohkubo F, Tanaka YR, Masamizu Y, Augustine GJ, Kasai H, Matsuzaki M (2013) In vivo optogenetic tracing of functional corticocortical connections between motor forelimb areas. Front Neural Circuits (in press)

Hajime Mushiake

Tomita H, Sugano E, Fukazawa Y, Isago H, Sugiyama Y, Hiroi T, Ishizuka T, Mushiake, H, Kato M, Hirabayashi M, Shigemoto R, Yawo H, Tamai M (2009) Visual properties of transgenic rats harboring the channelrhodopsin-2 gene regulated by the thy-1.2 promoter. PLoS One 4:e7679. (DOI:10.1371/journal.pone.0007679)

Mulder J, Zilberter M, Spence L, Tortoriello G, Uhlen M, Yanagawa Y, Aujard F, Hokfelt T, Harkany T (2009) Secretagogin is a Ca2+-binding protein specifying subpopulations of telencephalic neurons. Proc Natl Acad Sci U S A 106:22492-22497. (DOI:10.1073/pnas.0912484106)

Kameyama K, Sohya K, Ebina T, Fukuda A, Yanagawa Y, Tsumoto T (2010) Difference in binocularity and ocular dominance plasticity between GABAergic and excitatory cortical neurons. J Neurosci 30:1551-1559. (DOI:10.1523/JNEUROSCI.5025-09.2010)

Chen L, McKenna JT, Leonard MZ, Yanagawa Y, McCarley RW, Brown RE (2010) GAD67-GFP knock-in mice have normal sleep-wake patterns and sleep homeostasis. Neuroreport 21:216-220. (DOI:10.1097/WNR.0b013e32833655c4)

Lutcke H, Murayama M, Hahn T, Margolis DJ, Zum Alten Borgloh SM, Gobel W, Yang Y, Tang W, Kugler S, Sprengel R, Nagai T, Miyawaki A, Larkum ME, Helmchen F, Hasan MT (2010) Optical recording of neuronal activity with a genetically encoded calcium indicator in anesthetized and freely moving mice. Front Neural Circuits 4:9. (DOI:10.3389/fncir.2010.00009)

Mulder J, Spence L, Tortoriello G, DiNieri JA, Uhlen M, Shui B, Kotlikoff MI, Yanagawa Y, Aujard F, Hokfelt T, Hurd YL, Harkany T (2010) Secretagogin is a Ca2+-binding protein identifying prospective extended amygdala neurons in the developing mammalian telencephalon. Eur J Neurosci 31:2166-77. (DOI:10.1111/j.1460-9568.2010.07275.x)

Wen L, Wang H, Tanimoto S, Egawa R, Matsuzaka Y, Mushiake H, Ishizuka T, Yawo H (2010) Opto-current-clamp actuation of cortical neurons using a strategically designed channelrhodopsin. PLoS ONE 5:e12893. (DOI:10.1371/journal.pone.0012893)
Press release from Tohoku University

Osanai M, Tanaka S, Takeno Y, Takimoto S, Yagi T (2010) Spatiotemporal properties of the action potential propagation in the mouse visual cortical slice analyzed by calcium imaging. PLoS ONE 5:e13738. (DOI:10.1371/journal.pone.0013738)

Nagata-Kuroiwa R, Furutani N, Hara J, Hondo M, Ishii M, Abe T, Mieda M, Tsujino N, Motoike T, Yanagawa Y, Kuwaki T, Yamamoto M, Yanagisawa M, Sakurai T (2011) Critical role of neuropeptides b/w receptor 1 signaling in social behavior and fear memory. PLoS One 6:e16972. (DOI:10.1371/journal.pone.0016972)

Yokose J, Ishizuka T, Yoshida T, Aoki J, Koyanagi Y, Yawo H (2011) Lineage analysis of newly generated neurons in organotypic culture of rat hippocampus. Neurosci Res 69:223-233. (DOI:10.1016/j.neures.2010.11.010)

Uchida T, Oki Y, Yanagawa Y, Fukuda A (2011) A heterozygous deletion in the glutamate decarboxylase 67 gene enhances maternal and fetal stress vulnerability. Neurosci Res 69:276-282. (DOI:10.1016/j.neures.2010.12.010)

Shinomoto S, Omi T, Mita A, Mushiake H, Shima K, Matsuzaka Y, Tanji J (2011) Deciphering elapsed time and predicting action timing from neuronal population signals. Front Comput Neurosci 5:29. (DOI:10.3389/fncom.2011.00029)

Osanai M, Yaguchi Y, Yamada N, Oboshi F, Yagi T (2011) Spontaneous calcium changes in striatal cells. Electron Commun Jpn 94:43-52. (DOI:10.1002/ecj.10242)

Katori Y, Sakamoto K, Saito N, Tanji J, Mushiake H, Aihara K (2011) Representational switching by dynamical reorganization of attractor structure in a network model of the prefrontal cortex. PLoS Comput Biol. 7:e1002266. (DOI:10.1371/journal.pcbi.1002266)

Konno A, Honjo Y, Uchida A, Ishizuka T, Yawo H (2011) Evaluation of Sindbis virus vector displaying immunoglobulin-binding domain: antibody-dependent infection of neurons in living mice. Neurosci Res 71:328-334. (DOI:10.1016/j.neures.2011.08.013)

McNally JM, McCarley RW, McKenna JT, Yanagawa Y, Brown RE (2011) Complex receptor mediation of acute ketamine application on in vitro gamma oscillations in mouse prefrontal cortex: modeling gamma band oscillation abnormalities in schizophrenia. Neuroscience 199:51-63. (DOI:10.1016/j.neuroscience.2011.10.015)

Asano T, Ishizuka T, Yawo H (2012) Optically controlled contraction of photosensitive skeletal muscle cells. Biotechnol Bioeng 109:199-204. (DOI:10.1002/bit.23285)

Muller M, Faber-Zuschratter H, Yanagawa Y, Stork O, Schwegler H, Linke R (2012) Synaptology of ventral CA1 and subiculum projections to the basomedial nucleus of the amygdala in the mouse: relation to GABAergic interneurons. Brain Struct Funct 217:5-17. (DOI:10.1007/s00429-011-0326-9)

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Matsuzaka Y, Akiyama T, Tanji J, Mushiake H (2012) Neuronal activity in the primate dorsomedial prefrontal cortex contributes to strategic selection of response tactics. Proc Natl Acad Sci U S A 109:4633-4638. (DOI:10.1073/pnas.1119971109)
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Sakai S, Ueno K, Ishizuka T, Yawo H. Parallel and patterned optogenetic manipulation of neurons in the brain slice using a DMD-based projector. Neurosci Res, in press. (DOI:10.1016/j.neures.2012.03.009)

Wang ZH, Takada N, Uno H, Ishizuka T, Yawo H, Urisu T (2012) Positioning of the sensor cell on the sensing area using cell trapping pattern in incubation type planar patch clamp biosensor. Colloids Surf B Biointerfaces 96:44-49. (DOI:10.1016/j.colsurfb.2012.03.018)

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Kuki T, Ohshiro T, Fukazawa Y, Matsuzaka Y, Yawo H, Mushiake H (2013) Frequency-dependent entrainment of neocortical slow oscillation to repeated optogenetic stimulation in the anesthetized rat. Neurosci Res 75:35-45 (DOI:10.1016/j.neures.2012.10.007)

Osanai M, Suzuki T, Tamura A, Yonemura T, Mori I, Yanagawa Y, Yawo H, Mushiake H (2013) Development of a micro-imaging probe for functional brain imaging. Neurosci Res 75:46-52. (DOI:10.1016/j.neures.2012.10.008)
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Sakai S, Ueno K, Ishizuka T, Yawo H (2013) Parallel and patterned optogenetic manipulation of neurons in the brain slice using a DMD-based projector. Neurosci Res 75:59-64. (DOI:10.1016/j.neures.2012.03.009)

Umeda K, Shoji W, Sakai S, Muto A, Kawakami K, Ishizuka T, Yawo H (2013) Targeted expression of a chimeric channelrhodopsin in zebrafish under regulation of Gal4-UAS system. Neurosci Res 75:69-75. (DOI:10.1016/j.neures.2012.08.010)

Ohta H, Sakai S, Ito S, Ishizuka T, Fukazawa Y, Kemuriyama T, Tandai-Hiruma M, Mushiake H, Sato Y, Yawo H, Nishida Y (2013) Paired stimulation between CA3 and CA1 alters excitability of CA3 in the rat hippocampus. Neurosci Lett 534:182-187. (DOI:10.1016/j.neulet.2012.11.058)

McKenna JT, Yang C, Franciosi S, Winston S, Abarr KK, Rigby MS, Yanagawa Y, McCarley RW, Brown RE. (2013) Distribution and intrinsic membrane properties of basal forebrain GABAergic and parvalbumin neurons in the mouse. J Comp Neurol 521:1225-1250. (DOI:10.1002/cne.23290)

Egawa R, Hososhima S, Hou X, Katow H, Ishizuka T, Nakamura H, Yawo H (2013) Optogenetic probing and manipulation of the calyx-type presynaptic terminal in the embryonic chick ciliary ganglion. PLoS One 8:e59179. (DOI:10.1371/journal.pone.0059179)

Dimitrov EL, Yanagawa Y, Usdin TB. (2013) Forebrain GABAergic projections to locus coeruleus in mouse. J Comp Neurol. in press. (DOI:10.1002/cne.23291)

Okuyama S, Iwata J, Tanji J, Mushiake H (2013) Goal-oriented, flexible numerical operations by monkeys. Anim Cog. (in press)

Iwata I, Shima K, Tanji J, Mushiake H (2013) Neurons in the cingulate motor area signal context-based and outcome-based selection of volitional action. Exp Brain Res. (In press)

Matsuzaka Y, Akiyama T, Mushiake H (2013) Participation of neurons in multiple sectors of medial frontal cortex undergoes dynamic alterations depending on the demand for volitional control of action. Exp Brain Res. (in press)

Osawa S, Iwasaki M, Hosaka R, Matsuzaka Y, Tomita H, Ishizuka T, Sugano E, Okumura E, Yawo H, Nakasato N, Tominaga T, Mushiake H (2013) Optogenetically induced seizure and the longitudinal hippocampal network. PLoS One (in press)

Kensaku Mori

Imayoshi I, Sakamoto M, Yamaguchi M, Mori K, Kageyama R (2010) Essential roles of Notch signaling in maintenance of neural stem cells in the developing and adult brains. J Neurosci 30:3489-3498. (DOI:10.1523/JNEUROSCI.4987-09.2010)

Matsuda I, Fukaya M, Nakao H, Nakao K, Matsumoto H, Mori K, Watanabe M, Aiba A (2010) Development of the somatosensory cortex, the cerebellum, and the main olfactory system in Semaphorin 3F knockout mice. Neurosci Res 66:321-329. (DOI:10.1016/j.neures.2009.12.001)

Matsumoto H, Kobayakawa K, Kobayakawa R, Tashiro T, Mori K, Sakano H, Mori K (2010) Spatial arrangement of glomerular molecular-feature clusters in the odorant-receptor-class domains of the mouse olfactory bulb. J Neurophysiol 103:3490-3500. (DOI10.1152/jn.00035.2010)

Kikuta S, Sato K, Kashiwadani H, Tsunoda K, Yamasoba T, Mori K (2010) Neurons in the anterior olfactory nucleus pars externa detect right and left localization of odor sources. Proc Natl Acad Sci U S A 107:12363-12368. (DOI:10.1073/pnas.1003999107)

Nagayama S, Enerva A, Fletcher ML, Masurkar AV, Igarashi K, Mori K, Chen WR (2010) Differential axonal projection of mitral and tufted cells in the mouse main olfactory system. Front Neural Circuits 4:1-8. (DOI:10.3389/fncir.2010.00120)

Tsuboi A, Imai T, Kato HK, Matsumoto H, Igarashi KM, Suzuki M, Mori K, Sakano H (2011) Two highly homologous mouse odorant receptors encoded by tandemly-linked MOR29A and MOR29B genes respond differently to phenyl ethers. Eur J Neurosci 33:205-213. (DOI:10.1111/j.1460-9568.2010.07495.x)

Mitsui S, Igarashi KM, Mori K, Yoshihara Y (2011) Genetic visualization of the secondary olfactory pathway in Tbx21 transgenic mice. Neural Syst Circuits 1: 5. (DOI:10.1186/2042-1001-1-5)

Sakamoto M, Imayoshi I, Ohtsuka T, Yamaguchi M, Mori K, Kageyama R (2011) Continuous neurogenesis in the adult forebrain is required for innate olfactory responses. Proc Natl Acad Sci U S A 108:8479-8484. (DOI:10.1073/pnas.1018782108)

Manabe H, Kusumoto-Yoshida I, Ota M, Mori K (2011) Olfactory cortex generates synchronized top-down inputs to the olfactory bulb during slow-wave sleep. J Neurosci 31:8123-8133. (DOI:10.1523/JNEUROSCI.6578-10.2011)

Murata M, Imai M, Nakanishi S, Watanabe D, Pastan I, Kobayashi K, Nihira T, Mochizuki H, Yamada S, Mori K, Yamaguchi M (2011) Compensation of depleted neuronal subsets by new neurons in a local area of the adult olfactory bulb. J Neurosci 31:10540-10557. (DOI:10.1523/JNEUROSCI.1285-11.2011)

Yokoyama TK, Mochimaru D, Murata K, Manabe H, Kobayakawa K, Kobayakawa R, Sakano H, Mori K, Yamaguchi M (2011) Elimination of adult-born neurons in the olfactory bulb is promoted during the postprandial period. Neuron 71:883-897. (DOI:10.1016/j.neuron.2011.05.046)

Matsumoto T, Saito K, Nakamura A, Saito T, Nammoku T, Ishikawa M, Mori K (2012) Dried-bonito aroma components enhance salivary hemodynamic responses to broth tastes detected by near-infrared spectroscopy. J Agric Food Chem 60:805-811. (DOI:10.1021/jf203725r)

Yoshihara S, Takahashi H, Nishimura N, Naritsuka H, Shirao T, Hirai H, Yoshihara Y, Mori K, Stern PL, Tsuboi A (2012) 5T4 glycoprotein regulates the sensory input-dependent development of a specific subtype of newborn interneurons in the mouse olfactory bulb. J Neurosci 32:2217-2226. (DOI:10.1523/JNEUROSCI.5907-11.2012)

Igarashi K, Ieki N, An M, Yamaguchi Y, Nagayama S, Kobayakawa K, Kobayakawa R, Tanifuji M, Sakano H, Chen W, Mori K (2012) Parallel mitral and tufted cell pathways route distinct odor information to different targets in the olfactory cortex. J Neurosci 32:7970-7985. (DOI:10.1523/JNEUROSCI.0154-12.2012)

Muzuguchi R, Naritsuka H, Mori K, Yoshihara Y (2012) Tbr2 deficiency in mitral and tufted cells disrupts excitatory-inhibitory balance of neural circuitry in the mouse olfactory bulb. J Neurosci 32:8831-8844. (DOI:10.1523/JNEUROSCI.5746-11.2012)

Furutani Y, Kawasaki M, Matsuno H, Mitsui S, Mori K, Yoshihara Y (2012) Vitronectin induces phosphorylation of ezrin/radixin/moesin actin-binding proteins through binding to its novel neuronal receptor telencephalin. J Biol Chem 287: 39041-3904 (DOI:10.1074/jbc.M112.383851)

Saito-Iizumi K, Nakamura A, Matsumoto T, Fujiki A, Yamamoto N, Saito T, Nammoku T, Mori K (2013) Ethylmaltol Odor Enhances Salivary Hemodynamic Responses to Sucrose Taste as Detected by Near-Infrared Spectroscopy. Chemosensory Perception (in press)

Michisuke Yuzaki

Higo S, Akashi K, Sakimura K, Tamamaki N (2009) Subtypes of GABAergic neurons project axons in the neocortex. Front Neuroanat 3:1-5. (DOI:10.3389/neuro.05.025.2009)

Nishiyama J, Matsuda K, Kakegawa W, Yamada N, Motohashi J, Mizushima N, Yuzaki M (2010) Reevaluation of neurodegeneration in lurcher mice: constitutive ion fluxes cause cell death with, not by, autophagy. J Neurosci 30:2177-2187. (DOI:10.1523/JNEUROSCI.6030-09.2010)

Tanimura A, Yamazaki M, Hashimotodani Y, Uchigashima M, Kawata S, Abe M, Kita Y, Hashimoto K, Shimizu T, Watanabe M, Sakimura K, Kano M (2010) The endocannabinoid 2-arachidonoylglycerol produced by diacylglycerol lipase α mediates retrograde suppression of synaptic transmission. Neuron 65:320-327. (DOI:10.1016/j.neuron.2010.01.021)

Yamasaki M, Matsui M, Watanabe M (2010) Preferential localization of muscarinic M1 receptor on dendritic shaft and spine of cortical pyramidal cells and its anatomical evidence for volume transmission. J Neurosci 30:4408-4418. (DOI:10.1523/JNEUROSCI.5719-09.2010)

Katsumata K, Nishiyama J, Inoue T, Mizushima N, Takeda J, Yuzaki M (2010) Dynein- and activity-dependent retrograde transport of autophagosomes in neuronal axons. Autophagy 6:378-385. (DOI:10.4161/auto.6.3.11262)

Matsuda K, Miura E, Miyzaki T, Kakegawa W, Emi K, Narumi S, Fukazawa Y, Ito-Ishida A, Kondo T, Shigemoto R, Watanabe M, Yuzaki M (2010) Cbln1 is a ligand for an orphan glutamate receptor δ2, a bidirectional synapse organizer. Science 328:363-368. (DOI:10.1126/science.1185152)

Iijima T, Miura E, Watanabe M, Yuzaki M (2010) Distinct expression of C1q-like family mRNAs in mouse brain and biochemical characterization of their encoded proteins. Eur J Neurosci 31:1606-1615. (DOI:10.1111/j.1460-9568.2010.07202.x)

Yamazaki M, Fukaya M, Hashimoto K, Yamasaki M, Tsujita M, Itakura M, Abe M, Natsume R, Takahashi M, Kano M, Sakimura K, Watanabe M (2010) TARPs γ-2 and γ-7 are essential for AMPA receptor expression in the cerebellum. Eur J Neurosci 31:2204-2220. (DOI:10.1111/j.1460-9568.2010.07254.x)

Miyazaki T, Yamasaki M, Takeuchi T, Sakimura K, Mishina M, Watanabe M (2010) Ablation of glutamate receptor δ2 in adult Purkinje cells causes multiple innervation of climbing fibers by inducing aberrant invasion to parallel fiber innervation territory. J Neurosci 30:15196-15209. (DOI:10.1523/JNEUROSCI.0934-10.2010)

Miyazaki T, Yamasaki M, Uchigashima M, Matsushima A, Watanabe M. Cellular expression and subcellular localization of Secretogranin Ⅱ in the mouse hippocampus and cerebellum. Eur. J. Neurosci. 33:82-94, 2011. (DOI:10.1111/j.1460-9568.2010.07472.x)

Yoshida T, Uchigashima M, Yamasaki M, Katona I, Yamazaki M, Sakimura M, Kano M, Yoshioka M, Watanabe M (2011) Unique inhibitory synapse with particularly rich endocannabinoid signaling machinery on pyramidal neurons in basal amygdaloid nucleus. Proc Natl Acad Sci U S A 108:3059-3064. (DOI:10.1073/pnas.1012875108)

Hashimotodani Y, Ohno-Shosaku T, Yamazaki M, Sakimura K, Kano M (2011) Neuronal protease-activated receptor 1 drives synaptic retrograde signaling mediated by the endocannabinoid 2-arachidonoylglycerol. J Neurosci 31:3104-3109. (DOI:10.1523/jneurosci.6000-10.2011)

Yamasaki M, Miyazaki T, Azechi H, Abe M, Natsume R, Hagiwara T, Aiba A, Mishina M, Sakimura K, Watanabe M (2011) Glutamate receptor δ2 is essential for input pathway-dependent regulation of synaptic AMPAR contents in cerebellar Purkinje cells. J Neurosci 31:3362-3374. (DOI:10.1523/jneurosci.5601-10.2011)

Kakegawa W, Miyoshi Y, Hamase, K, Matsuda S, Matsuda K, Kohda K, Emi K, Motohashi J, Konno R, Zaitsu K, Yuzaki M (2011) D-Serine regulates cerebellar LTD and motor coordination through the δ2 glutamate receptor. Nat Neurosci 14:603-611. (DOI:10.1038/nn.2791)

Matsuda K, Yuzaki M (2011) Cbln family proteins promote synapse formation by regulating distinct neurexin signaling pathways in various brain regions. Eur J Neurosci 33:1447-1461. (DOI:10.1111/j.1460-9568.2011.07638.x)

Uchigashima M, Yamazaki M, Yamasaki M, Tanimura A, Sakimura K, Kano M, Watanabe M (2011) Molecular and morphological configuration for 2-arachidonoylglycerol-mediated retrograde signaling at mossy cell-granule cell synapses in the dentate gyrus. J Neurosci 31:7700-7714. (DOI:10.1523/JNEUROSCI.5665-10.2011)

Wu S, Esumi S, Watanabe K, Chen J, Nakamura KC, Nakamura K, Kometani K, Minato N, Yanagawa Y, Akashi K, Sakimura K, Kaneko T, Tamamaki N (2011) Tangential migration and proliferation of intermediate progenitors of GABAergic neurons in the mouse telencephalon. Development 138:2499-2509. (DOI:10.1242/dev.063032)

Hashimoto K, Tsujita M, Miyazaki T, Kitamura K, Yamazaki M, Shin HS, Watanabe M, Sakimura K, Kano M (2011) Postsynaptic P/Q-type Ca2+ channels in Purkinje cells mediate synaptic competition and elimination in developing cerebellum. Proc Natl Acad Sci U S A 108:9987-9992. (DOI:10.1073/pnas.1101488108)

Emi K, Kohda K, Kakegawa W, Narumi S, Yuzaki M (2011) A new rapid protocol for eyeblink conditioning to assess cerebellar motor learning. Neurochem Res 36:1314-1322. (DOI:10.1007/s11064-010-0392-z)

Gray JA, Shi Y, Usui H, During MJ, Sakimura K, Nicoll RA (2011) Distinct modes of AMPA receptor suppression at developing synapses by GluN2a and GluN2b: single-cell NMDA receptor subunit deletion in vivo. Neuron 71:1085-1101. (DOI:10.1016/j.neuron.2011.08.007)

Ichikawa R, Yamasaki M, Miyazaki T, Konno K, Hashimoto K, Tatsumi H, Inoue Y, Kano M, Watanabe M (2011) Developmental switching of perisomatic innervation from climbing fibers to basket cell fibers in cerebellar Purkinje cells. J Neurosci 31:16916-16927. (DOI:10.1523/jneurosci.2396-11.2011)

Unoki T, Matsuda S, Kakegawa W, Van NT, Kohda K, Suzuki A, Funakoshi Y, Hasegawa H, Yuzaki M, Kanaho K (2012) NMDA receptor-mediated PIP5K activation to produce PI(4,5)P2 is essential for AMPA receptor endocytosis during LTD. Neuron 73:135-148. (DOI:10.1016/j.neuron.2011.09.034)

Miyazaki T, Yamasaki M, Hashimoto K, Yamazaki M, Abe M, Usui H, Kano M, Sakimura K, Watanabe M (2012) Cav2.1 in cerebellar Purkinje cells regulates competitive excitatory synaptic wiring, cell survival, and cerebellar biochemical compartmentalization. J Neurosci 32:1311-1328. (DOI:10.1523/jneurosci.2755-11.2012)

Nomura T, Kakegawa W, Matsuda S, Kohda K, Nishiyama J, Takahashi T, Yuzaki M (2012) Cerebellar long-term depression requires dephosphorylation of TARP in Purkinje cells. Eur J Neurosci 35:402-410. (DOI:10.1111/j.1460-9568.2011.07963.x)

Nishiyama J, Hayashi Y, Nomura T, Miura E, Kakegawa W, Yuzaki M (2012) Selective and regulated gene expression in murine Purkinje cells by in utero electroporation. Eur J Neurosci 36:2867-76. (DOI:10.1111/j.1460-9568.2012.08203.x)

Yuzaki M (2012) Cerebellar LTD vs. motor learning-Lessons learned from studying GluD2. Neural Netw (DOI:10.1016/j.neunet.2012.07.001)

Takeuchi E, Sato Y, Miura E, Yamaura H, Yuzaki M, Yanagihara D (2012) Characteristics of gait ataxia in δ2 glutamate receptor mutant mice, ho15J. PLoS One 7:e47553. (DOI:10.1371/journal.pone.0047553)

Ito-Ishida A, Miyazaki T, Miura E, Matsuda K, Watanabe M, Yuzaki M, Okabe S (2012) Presynaptically released Cbln1 induces dynamic axonal structural changes by interacting with GluD2 during cerebellar synapse formation. Neuron 76:549-64. (DOI:10.1016/j.neuron.2012.07.027)

Kohda K, Kakegawa W, Matsuda S, Yamamoto T, Hirano H, Yuzaki M (2013) The δ2 glutamate receptor gates long-term depression by coordinating interactions between two AMPA receptor phosphorylation sites. Proc Natl Acad Sci U S A 110:E948-57. (DOI:10.1073/pnas.1218380110)